Variant report

Variant	rs61610658
Chromosome Location	chr6:133514379-133514380
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs56024425	1.00[EUR][1000 genomes]
rs58728165	1.00[EUR][1000 genomes]
rs61143962	1.00[EUR][1000 genomes]
rs6900795	1.00[EUR][1000 genomes]
rs6928449	1.00[EUR][1000 genomes]
rs73776007	1.00[EUR][1000 genomes]
rs73776008	1.00[EUR][1000 genomes]
rs73776009	1.00[EUR][1000 genomes]
rs7741494	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7742767	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7749325	1.00[EUR][1000 genomes]
rs7751520	1.00[EUR][1000 genomes]
rs7775612	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483552	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483553	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483556	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493545	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493546	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493553	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493558	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428154	chr6:133271975-133522803	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv2758080	chr6:133444719-133627364	Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2759470	chr6:133444719-133627364	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv886677	chr6:133454738-133515602	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv464058	chr6:133492507-133527935	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv604698	chr6:133492507-133527935	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv470862	chr6:133492507-133600402	Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133512200-133514400	Enhancers	HSMMtube	muscle
2	chr6:133513600-133514600	Weak transcription	Psoas Muscle	Psoas

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