Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:133484970..133486703-chr6:133490391..133493056,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs56024425	1.00[EUR][1000 genomes]
rs58728165	1.00[EUR][1000 genomes]
rs61143962	1.00[EUR][1000 genomes]
rs61610658	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6900795	1.00[EUR][1000 genomes]
rs6928449	1.00[EUR][1000 genomes]
rs73776007	1.00[EUR][1000 genomes]
rs73776008	1.00[EUR][1000 genomes]
rs73776009	1.00[EUR][1000 genomes]
rs7741494	0.82[ASW][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7742767	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7749325	1.00[EUR][1000 genomes]
rs7751520	1.00[EUR][1000 genomes]
rs7775612	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483552	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493507	1.00[MEX][hapmap]
rs9493545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493553	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493558	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428154	chr6:133271975-133522803	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv2758080	chr6:133444719-133627364	Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2759470	chr6:133444719-133627364	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv886677	chr6:133454738-133515602	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133486800-133493200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:133490800-133492200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr6:133491600-133492200	Enhancers	Brain Hippocampus Middle	brain
4	chr6:133491600-133493200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:133491600-133493400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:133492000-133493200	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr6:133492000-133493400	Weak transcription	Brain Substantia Nigra	brain
8	chr6:133492000-133494200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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