Variant report
| Variant | rs9483552 |
|---|---|
| Chromosome Location | chr6:133485685-133485686 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:133484970..133486703-chr6:133490391..133493056,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs56024425 | 1.00[EUR][1000 genomes] |
| rs58728165 | 1.00[EUR][1000 genomes] |
| rs61143962 | 1.00[EUR][1000 genomes] |
| rs61610658 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6900795 | 1.00[EUR][1000 genomes] |
| rs6928449 | 1.00[EUR][1000 genomes] |
| rs73776007 | 1.00[EUR][1000 genomes] |
| rs73776008 | 1.00[EUR][1000 genomes] |
| rs73776009 | 1.00[EUR][1000 genomes] |
| rs7741494 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7742767 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7749325 | 1.00[EUR][1000 genomes] |
| rs7751520 | 1.00[EUR][1000 genomes] |
| rs7775612 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9483553 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9483556 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9493545 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9493546 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9493553 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9493558 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv428154 | chr6:133271975-133522803 | Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| 2 | esv2758080 | chr6:133444719-133627364 | Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | esv2759470 | chr6:133444719-133627364 | Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv886677 | chr6:133454738-133515602 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:133485400-133485800 | ZNF genes & repeats | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 2 | chr6:133485600-133486800 | Enhancers | IMR90 fetal lung fibroblasts Cell Line | lung |
