Variant report

Variant	rs5913723
Chromosome Location	chrX:77710039-77710040
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:77707988..77710201-chrX:77716605..77718523,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs167674	0.86[CEU][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.85[TSI][hapmap]
rs320988	0.86[CEU][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.85[TSI][hapmap]
rs320990	0.93[CEU][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap]
rs320992	0.86[CEU][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.85[TSI][hapmap]
rs320995	0.86[CEU][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap]
rs320996	0.86[CEU][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.85[TSI][hapmap]
rs320999	1.00[CEU][hapmap];0.81[CHB][hapmap];0.80[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap]
rs321005	0.81[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap]
rs321007	0.82[CHB][hapmap];0.83[CHD][hapmap]
rs321028	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.80[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.94[MEX][hapmap];0.82[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap]
rs321029	0.84[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.80[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.94[MEX][hapmap];0.81[MKK][hapmap];0.95[TSI][hapmap]
rs321073	0.86[CEU][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.85[TSI][hapmap]
rs321074	0.86[CEU][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap];0.81[TSI][hapmap]
rs321085	0.86[CEU][hapmap];0.82[JPT][hapmap]
rs321086	0.86[CEU][hapmap];0.82[JPT][hapmap]
rs321088	0.86[CEU][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.85[TSI][hapmap]
rs321090	0.84[ASW][hapmap];1.00[CEU][hapmap];0.80[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap]
rs321091	1.00[CEU][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap]
rs321094	1.00[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap]
rs321095	1.00[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap]
rs379704	1.00[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap]
rs428207	1.00[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap]
rs4826052	0.82[CHB][hapmap]
rs4826053	0.94[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap]
rs767400	0.94[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529299	chrX:77040316-77947157	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv532880	chrX:77085352-77769755	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv521599	chrX:77662439-78124078	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv528728	chrX:77662439-78124078	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv510835	chrX:77694972-77782068	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:77708600-77711400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chrX:77709800-77710400	Enhancers	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links