Variant report

Variant	rs5913859
Chromosome Location	chrX:55758238-55758239
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:55744136..55745947-chrX:55757019..55759912,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000083750	Chromatin interaction

rs_ID	r²[population]
rs1325572	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs1473760	1.00[YRI][hapmap]
rs1473761	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2375465	1.00[CEU][hapmap]
rs4826411	1.00[CEU][hapmap]
rs5913857	1.00[YRI][hapmap]
rs5913861	1.00[CEU][hapmap]
rs5914428	1.00[YRI][hapmap]
rs5914434	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs5914436	1.00[YRI][hapmap]
rs5914440	1.00[YRI][hapmap]
rs5960093	1.00[YRI][hapmap]
rs5960480	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs6611425	1.00[CEU][hapmap]
rs6612359	1.00[CEU][hapmap];1.00[YRI][hapmap]

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:55744800-55763200	Weak transcription	Aorta	Aorta
2	chrX:55744800-55763600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chrX:55744800-55774600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chrX:55745000-55763400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chrX:55745200-55758600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chrX:55745200-55763200	Weak transcription	Pancreas	Pancrea
7	chrX:55745200-55763400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chrX:55745200-55763600	Weak transcription	Gastric	stomach
9	chrX:55745200-55763800	Weak transcription	Esophagus	oesophagus
10	chrX:55745200-55765000	Weak transcription	Colonic Mucosa	Colon
11	chrX:55745200-55773400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chrX:55745200-55781200	Weak transcription	Placenta Amnion	Placenta Amnion
13	chrX:55745200-55785800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chrX:55745400-55758400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chrX:55745400-55758400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chrX:55745400-55762000	Weak transcription	Brain Substantia Nigra	brain
17	chrX:55745400-55762200	Weak transcription	Brain Cingulate Gyrus	brain
18	chrX:55745400-55763200	Weak transcription	Thymus	Thymus
19	chrX:55745400-55763400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chrX:55745400-55763400	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chrX:55745400-55763400	Weak transcription	Right Ventricle	heart
22	chrX:55745400-55764800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chrX:55745400-55765600	Weak transcription	Muscle Satellite Cultured Cells	--
24	chrX:55745400-55766200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chrX:55745400-55769400	Weak transcription	Rectal Smooth Muscle	rectum
26	chrX:55745400-55789800	Weak transcription	NHDF-Ad	bronchial
27	chrX:55745400-55791000	Weak transcription	Psoas Muscle	Psoas
28	chrX:55745400-55791000	Weak transcription	HSMMtube	muscle
29	chrX:55745600-55770800	Weak transcription	K562	blood
30	chrX:55745800-55782800	Weak transcription	Fetal Brain Male	brain
31	chrX:55745800-55792600	Weak transcription	Colon Smooth Muscle	Colon
32	chrX:55745800-55793000	Weak transcription	NH-A	brain
33	chrX:55746000-55790200	Weak transcription	Small Intestine	intestine
34	chrX:55746200-55763400	Weak transcription	HepG2	liver
35	chrX:55746400-55763200	Weak transcription	Fetal Intestine Small	intestine
36	chrX:55746400-55764600	Weak transcription	Fetal Heart	heart
37	chrX:55746800-55759600	Strong transcription	Liver	Liver
38	chrX:55747400-55760000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chrX:55747400-55773800	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chrX:55747600-55759600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chrX:55748600-55761600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chrX:55748800-55767800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chrX:55749200-55758800	Strong transcription	Fetal Intestine Large	intestine
44	chrX:55749400-55784800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chrX:55750200-55763000	Weak transcription	Fetal Stomach	stomach
46	chrX:55750200-55766200	Strong transcription	Dnd41	blood
47	chrX:55750400-55758400	Weak transcription	Ovary	ovary
48	chrX:55751800-55758400	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chrX:55751800-55763400	Weak transcription	Spleen	Spleen
50	chrX:55751800-55763600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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