Variant report

Variant	rs5914436
Chromosome Location	chrX:55766033-55766034
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1007153	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap]
rs12557467	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs1325572	1.00[YRI][hapmap]
rs1325573	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1473760	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1473761	1.00[YRI][hapmap]
rs17277280	0.93[CEU][hapmap];1.00[MEX][hapmap]
rs1927597	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2375466	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap]
rs4826281	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4826283	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4826287	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap]
rs4826413	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5000659	0.93[CEU][hapmap];1.00[MEX][hapmap]
rs5913857	0.92[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap]
rs5913859	1.00[YRI][hapmap]
rs5914428	0.92[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap]
rs5914432	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap]
rs5914433	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914434	1.00[YRI][hapmap]
rs5914440	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs5960093	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs5960480	1.00[YRI][hapmap]
rs6611431	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap]
rs6612359	1.00[YRI][hapmap]
rs6612417	0.87[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap]
rs913440	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:55744800-55774600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chrX:55745200-55773400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chrX:55745200-55781200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chrX:55745200-55785800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chrX:55745400-55766200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chrX:55745400-55769400	Weak transcription	Rectal Smooth Muscle	rectum
7	chrX:55745400-55789800	Weak transcription	NHDF-Ad	bronchial
8	chrX:55745400-55791000	Weak transcription	Psoas Muscle	Psoas
9	chrX:55745400-55791000	Weak transcription	HSMMtube	muscle
10	chrX:55745600-55770800	Weak transcription	K562	blood
11	chrX:55745800-55782800	Weak transcription	Fetal Brain Male	brain
12	chrX:55745800-55792600	Weak transcription	Colon Smooth Muscle	Colon
13	chrX:55745800-55793000	Weak transcription	NH-A	brain
14	chrX:55746000-55790200	Weak transcription	Small Intestine	intestine
15	chrX:55747400-55773800	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chrX:55748800-55767800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chrX:55749400-55784800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chrX:55750200-55766200	Strong transcription	Dnd41	blood
19	chrX:55753200-55782400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chrX:55754600-55774200	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chrX:55755400-55767200	Strong transcription	Primary T cells from cord blood	blood
22	chrX:55757000-55783600	Weak transcription	HUVEC	blood vessel
23	chrX:55757400-55771000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chrX:55757600-55773400	Weak transcription	H1 Cell Line	embryonic stem cell
25	chrX:55758200-55767200	Weak transcription	NHLF	lung
26	chrX:55758800-55780000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chrX:55758800-55793000	Weak transcription	Osteobl	bone
28	chrX:55759600-55767800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chrX:55759800-55773800	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chrX:55760200-55784600	Weak transcription	A549	lung
31	chrX:55760800-55768600	Strong transcription	Hela-S3	cervix
32	chrX:55761400-55772200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chrX:55761400-55772200	Strong transcription	Duodenum Mucosa	Duodenum
34	chrX:55761400-55773800	Strong transcription	Duodenum Smooth Muscle	Duodenum
35	chrX:55761400-55774200	Strong transcription	Liver	Liver
36	chrX:55762200-55766200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chrX:55762200-55773200	Weak transcription	Fetal Kidney	kidney
38	chrX:55763000-55766200	Strong transcription	Brain Anterior Caudate	brain
39	chrX:55763000-55766400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chrX:55763000-55766400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chrX:55763000-55773800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chrX:55763200-55766200	Strong transcription	Primary T cells fromperipheralblood	blood
43	chrX:55763200-55766200	Strong transcription	Primary T helper cells fromperipheralblood	blood
44	chrX:55763200-55766200	Strong transcription	Fetal Intestine Small	intestine
45	chrX:55763200-55766200	Strong transcription	Pancreas	Pancrea
46	chrX:55763200-55766400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chrX:55763200-55766400	Strong transcription	Fetal Lung	lung
48	chrX:55763200-55767000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chrX:55763200-55770200	Strong transcription	Primary neutrophils fromperipheralblood	blood
50	chrX:55763200-55772200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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