Variant report

Variant	rs6611431
Chromosome Location	chrX:55788155-55788156
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:55780590..55782877-chrX:55788007..55790899,2	K562	blood:

Variant related genes	Relation type
ENSG00000083750	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1007153	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs12557467	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap]
rs1325573	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1473760	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17277280	0.93[CEU][hapmap];0.84[MEX][hapmap]
rs1927597	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2375466	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap]
rs4826281	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4826283	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4826287	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs4826413	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5000659	0.93[CEU][hapmap];0.84[MEX][hapmap]
rs5913857	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap]
rs5914428	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.81[TSI][hapmap]
rs5914432	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap]
rs5914433	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914436	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap]
rs5914440	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5960093	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5960123	0.93[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.83[JPT][hapmap]
rs6612417	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs913440	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:55745400-55789800	Weak transcription	NHDF-Ad	bronchial
2	chrX:55745400-55791000	Weak transcription	Psoas Muscle	Psoas
3	chrX:55745400-55791000	Weak transcription	HSMMtube	muscle
4	chrX:55745800-55792600	Weak transcription	Colon Smooth Muscle	Colon
5	chrX:55745800-55793000	Weak transcription	NH-A	brain
6	chrX:55746000-55790200	Weak transcription	Small Intestine	intestine
7	chrX:55758800-55793000	Weak transcription	Osteobl	bone
8	chrX:55765200-55792800	Weak transcription	Fetal Heart	heart
9	chrX:55765800-55791200	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chrX:55766000-55788200	Weak transcription	Thymus	Thymus
11	chrX:55766000-55791600	Weak transcription	Gastric	stomach
12	chrX:55766200-55793200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chrX:55766200-55793200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chrX:55766200-55793800	Weak transcription	Brain Substantia Nigra	brain
15	chrX:55766200-55810800	Weak transcription	Pancreas	Pancrea
16	chrX:55770200-55792200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chrX:55770800-55800600	Weak transcription	Primary T cells fromperipheralblood	blood
18	chrX:55771400-55791000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chrX:55772200-55789600	Weak transcription	Fetal Muscle Trunk	muscle
20	chrX:55772200-55800800	Weak transcription	Spleen	Spleen
21	chrX:55772400-55790000	Weak transcription	Fetal Thymus	thymus
22	chrX:55772600-55788200	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chrX:55773000-55788800	Weak transcription	Fetal Muscle Leg	muscle
24	chrX:55773000-55805400	Weak transcription	Aorta	Aorta
25	chrX:55773400-55788400	Weak transcription	Fetal Lung	lung
26	chrX:55773600-55789800	Weak transcription	Brain Hippocampus Middle	brain
27	chrX:55774800-55791800	Weak transcription	Fetal Stomach	stomach
28	chrX:55774800-55792800	Weak transcription	Fetal Intestine Small	intestine
29	chrX:55775200-55790000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chrX:55775200-55792800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chrX:55775400-55791800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chrX:55777600-55791400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chrX:55778800-55789200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chrX:55778800-55789800	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chrX:55779000-55788800	Weak transcription	Primary T cells from cord blood	blood
36	chrX:55779000-55789200	Weak transcription	Ovary	ovary
37	chrX:55779000-55793200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chrX:55779800-55793400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chrX:55780000-55788400	Weak transcription	Brain Anterior Caudate	brain
40	chrX:55780600-55791400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chrX:55781400-55800200	Weak transcription	Adipose Nuclei	Adipose
42	chrX:55781400-55812800	Weak transcription	Left Ventricle	heart
43	chrX:55781600-55788200	Weak transcription	Brain Angular Gyrus	brain
44	chrX:55781600-55790600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chrX:55781600-55791600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chrX:55781600-55794600	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chrX:55782400-55790600	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chrX:55784800-55789400	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chrX:55784800-55793600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chrX:55785000-55788400	Weak transcription	Hela-S3	cervix

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