Variant report

Variant	rs2375466
Chromosome Location	chrX:55774087-55774088
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1007153	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap]
rs12557467	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap]
rs1325573	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1473760	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17277280	0.84[MEX][hapmap]
rs1927597	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4826281	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4826283	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4826287	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap]
rs4826413	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5000659	0.84[MEX][hapmap]
rs5913857	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap]
rs5914428	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap]
rs5914432	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap]
rs5914433	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914436	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap]
rs5914440	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5960093	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6611431	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap]
rs6612417	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap]
rs913440	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:55744800-55774600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chrX:55745200-55781200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chrX:55745200-55785800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chrX:55745400-55789800	Weak transcription	NHDF-Ad	bronchial
5	chrX:55745400-55791000	Weak transcription	Psoas Muscle	Psoas
6	chrX:55745400-55791000	Weak transcription	HSMMtube	muscle
7	chrX:55745800-55782800	Weak transcription	Fetal Brain Male	brain
8	chrX:55745800-55792600	Weak transcription	Colon Smooth Muscle	Colon
9	chrX:55745800-55793000	Weak transcription	NH-A	brain
10	chrX:55746000-55790200	Weak transcription	Small Intestine	intestine
11	chrX:55749400-55784800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chrX:55753200-55782400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chrX:55754600-55774200	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chrX:55757000-55783600	Weak transcription	HUVEC	blood vessel
15	chrX:55758800-55780000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chrX:55758800-55793000	Weak transcription	Osteobl	bone
17	chrX:55760200-55784600	Weak transcription	A549	lung
18	chrX:55761400-55774200	Strong transcription	Liver	Liver
19	chrX:55763600-55774200	Strong transcription	Primary B cells from peripheral blood	blood
20	chrX:55765200-55792800	Weak transcription	Fetal Heart	heart
21	chrX:55765400-55779800	Weak transcription	Left Ventricle	heart
22	chrX:55765800-55778200	Weak transcription	Placenta	Placenta
23	chrX:55765800-55778800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chrX:55765800-55782400	Weak transcription	Colonic Mucosa	Colon
25	chrX:55765800-55787000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chrX:55765800-55791200	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chrX:55766000-55778800	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chrX:55766000-55788200	Weak transcription	Thymus	Thymus
29	chrX:55766000-55791600	Weak transcription	Gastric	stomach
30	chrX:55766200-55774600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chrX:55766200-55774600	Weak transcription	Fetal Intestine Small	intestine
32	chrX:55766200-55779400	Weak transcription	Brain Anterior Caudate	brain
33	chrX:55766200-55781200	Weak transcription	Esophagus	oesophagus
34	chrX:55766200-55781200	Weak transcription	Right Ventricle	heart
35	chrX:55766200-55781400	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chrX:55766200-55781400	Weak transcription	Brain Cingulate Gyrus	brain
37	chrX:55766200-55786000	Weak transcription	HepG2	liver
38	chrX:55766200-55786400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chrX:55766200-55786600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chrX:55766200-55793200	Weak transcription	Muscle Satellite Cultured Cells	--
41	chrX:55766200-55793200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chrX:55766200-55793800	Weak transcription	Brain Substantia Nigra	brain
43	chrX:55766200-55810800	Weak transcription	Pancreas	Pancrea
44	chrX:55766400-55787000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chrX:55768400-55778800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chrX:55768600-55777800	Weak transcription	Hela-S3	cervix
47	chrX:55769800-55778000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chrX:55769800-55785600	Weak transcription	HMEC	breast
49	chrX:55770200-55778000	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chrX:55770200-55780600	Weak transcription	Rectal Mucosa Donor 29	rectum

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