Variant report

Variant	rs4826283
Chromosome Location	chrX:55750347-55750348
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:55746055..55747904-chrX:55749271..55751160,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1007153	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12557467	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1325573	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1473760	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17277280	0.93[CEU][hapmap]
rs1927597	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2375466	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4826281	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4826287	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4826413	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5000659	0.93[CEU][hapmap]
rs5913857	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914428	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914433	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914436	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914440	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5960093	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6611431	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6612417	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs913440	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:55744800-55763200	Weak transcription	Aorta	Aorta
2	chrX:55744800-55763600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chrX:55744800-55774600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chrX:55745000-55763400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chrX:55745200-55756000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chrX:55745200-55756200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chrX:55745200-55756200	Weak transcription	Lung	lung
8	chrX:55745200-55756200	Weak transcription	NHLF	lung
9	chrX:55745200-55756400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chrX:55745200-55756400	Weak transcription	Brain Germinal Matrix	brain
11	chrX:55745200-55757400	Weak transcription	Fetal Lung	lung
12	chrX:55745200-55757600	Weak transcription	Left Ventricle	heart
13	chrX:55745200-55758000	Weak transcription	Placenta	Placenta
14	chrX:55745200-55758200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chrX:55745200-55758600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chrX:55745200-55763200	Weak transcription	Pancreas	Pancrea
17	chrX:55745200-55763400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chrX:55745200-55763600	Weak transcription	Gastric	stomach
19	chrX:55745200-55763800	Weak transcription	Esophagus	oesophagus
20	chrX:55745200-55765000	Weak transcription	Colonic Mucosa	Colon
21	chrX:55745200-55773400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chrX:55745200-55781200	Weak transcription	Placenta Amnion	Placenta Amnion
23	chrX:55745200-55785800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chrX:55745400-55754400	Weak transcription	Brain Hippocampus Middle	brain
25	chrX:55745400-55755200	Weak transcription	Stomach Smooth Muscle	stomach
26	chrX:55745400-55756000	Weak transcription	H1 Cell Line	embryonic stem cell
27	chrX:55745400-55756000	Weak transcription	Osteobl	bone
28	chrX:55745400-55756400	Weak transcription	Primary hematopoietic stem cells	blood
29	chrX:55745400-55756800	Weak transcription	HMEC	breast
30	chrX:55745400-55758400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chrX:55745400-55758400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chrX:55745400-55762000	Weak transcription	Brain Substantia Nigra	brain
33	chrX:55745400-55762200	Weak transcription	Brain Cingulate Gyrus	brain
34	chrX:55745400-55763200	Weak transcription	Thymus	Thymus
35	chrX:55745400-55763400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chrX:55745400-55763400	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chrX:55745400-55763400	Weak transcription	Right Ventricle	heart
38	chrX:55745400-55764800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chrX:55745400-55765600	Weak transcription	Muscle Satellite Cultured Cells	--
40	chrX:55745400-55766200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chrX:55745400-55769400	Weak transcription	Rectal Smooth Muscle	rectum
42	chrX:55745400-55789800	Weak transcription	NHDF-Ad	bronchial
43	chrX:55745400-55791000	Weak transcription	Psoas Muscle	Psoas
44	chrX:55745400-55791000	Weak transcription	HSMMtube	muscle
45	chrX:55745600-55756000	Weak transcription	Fetal Brain Female	brain
46	chrX:55745600-55770800	Weak transcription	K562	blood
47	chrX:55745800-55782800	Weak transcription	Fetal Brain Male	brain
48	chrX:55745800-55792600	Weak transcription	Colon Smooth Muscle	Colon
49	chrX:55745800-55793000	Weak transcription	NH-A	brain
50	chrX:55746000-55752000	Strong transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links