Variant report

Variant	rs5914440
Chromosome Location	chrX:55772654-55772655
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1007153	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12557467	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1325572	1.00[YRI][hapmap]
rs1325573	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1473760	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1473761	1.00[YRI][hapmap]
rs17277280	1.00[CEU][hapmap]
rs1927597	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2375466	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4826281	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4826283	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4826287	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4826413	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5000659	1.00[CEU][hapmap]
rs5913857	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs5913859	1.00[YRI][hapmap]
rs5914428	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs5914432	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914433	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914434	1.00[YRI][hapmap]
rs5914436	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs5960093	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs5960480	1.00[YRI][hapmap]
rs6611431	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6612359	1.00[YRI][hapmap]
rs6612417	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs913440	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:55744800-55774600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chrX:55745200-55773400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chrX:55745200-55781200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chrX:55745200-55785800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chrX:55745400-55789800	Weak transcription	NHDF-Ad	bronchial
6	chrX:55745400-55791000	Weak transcription	Psoas Muscle	Psoas
7	chrX:55745400-55791000	Weak transcription	HSMMtube	muscle
8	chrX:55745800-55782800	Weak transcription	Fetal Brain Male	brain
9	chrX:55745800-55792600	Weak transcription	Colon Smooth Muscle	Colon
10	chrX:55745800-55793000	Weak transcription	NH-A	brain
11	chrX:55746000-55790200	Weak transcription	Small Intestine	intestine
12	chrX:55747400-55773800	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chrX:55749400-55784800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chrX:55753200-55782400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chrX:55754600-55774200	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chrX:55757000-55783600	Weak transcription	HUVEC	blood vessel
17	chrX:55757600-55773400	Weak transcription	H1 Cell Line	embryonic stem cell
18	chrX:55758800-55780000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chrX:55758800-55793000	Weak transcription	Osteobl	bone
20	chrX:55759800-55773800	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chrX:55760200-55784600	Weak transcription	A549	lung
22	chrX:55761400-55773800	Strong transcription	Duodenum Smooth Muscle	Duodenum
23	chrX:55761400-55774200	Strong transcription	Liver	Liver
24	chrX:55762200-55773200	Weak transcription	Fetal Kidney	kidney
25	chrX:55763000-55773800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chrX:55763600-55774200	Strong transcription	Primary B cells from peripheral blood	blood
27	chrX:55765200-55792800	Weak transcription	Fetal Heart	heart
28	chrX:55765400-55779800	Weak transcription	Left Ventricle	heart
29	chrX:55765800-55778200	Weak transcription	Placenta	Placenta
30	chrX:55765800-55778800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chrX:55765800-55782400	Weak transcription	Colonic Mucosa	Colon
32	chrX:55765800-55787000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chrX:55765800-55791200	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chrX:55766000-55773000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chrX:55766000-55778800	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chrX:55766000-55788200	Weak transcription	Thymus	Thymus
37	chrX:55766000-55791600	Weak transcription	Gastric	stomach
38	chrX:55766200-55774600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chrX:55766200-55774600	Weak transcription	Fetal Intestine Small	intestine
40	chrX:55766200-55779400	Weak transcription	Brain Anterior Caudate	brain
41	chrX:55766200-55781200	Weak transcription	Esophagus	oesophagus
42	chrX:55766200-55781200	Weak transcription	Right Ventricle	heart
43	chrX:55766200-55781400	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chrX:55766200-55781400	Weak transcription	Brain Cingulate Gyrus	brain
45	chrX:55766200-55786000	Weak transcription	HepG2	liver
46	chrX:55766200-55786400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chrX:55766200-55786600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chrX:55766200-55793200	Weak transcription	Muscle Satellite Cultured Cells	--
49	chrX:55766200-55793200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chrX:55766200-55793800	Weak transcription	Brain Substantia Nigra	brain

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