Variant report

Variant	rs5960480
Chromosome Location	chrX:55757744-55757745
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:55744136..55745947-chrX:55757019..55759912,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000083750	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1325572	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs1473760	1.00[YRI][hapmap]
rs1473761	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs2375465	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs4826411	1.00[CEU][hapmap]
rs5913857	0.83[LWK][hapmap];1.00[YRI][hapmap]
rs5913859	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs5913861	1.00[CEU][hapmap]
rs5914428	0.83[LWK][hapmap];1.00[YRI][hapmap]
rs5914434	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs5914436	1.00[YRI][hapmap]
rs5914440	1.00[YRI][hapmap]
rs5960093	1.00[YRI][hapmap]
rs6611425	1.00[CEU][hapmap]
rs6612359	1.00[CEU][hapmap];1.00[YRI][hapmap]

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:55744800-55763200	Weak transcription	Aorta	Aorta
2	chrX:55744800-55763600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chrX:55744800-55774600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chrX:55745000-55763400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chrX:55745200-55758000	Weak transcription	Placenta	Placenta
6	chrX:55745200-55758200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chrX:55745200-55758600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chrX:55745200-55763200	Weak transcription	Pancreas	Pancrea
9	chrX:55745200-55763400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chrX:55745200-55763600	Weak transcription	Gastric	stomach
11	chrX:55745200-55763800	Weak transcription	Esophagus	oesophagus
12	chrX:55745200-55765000	Weak transcription	Colonic Mucosa	Colon
13	chrX:55745200-55773400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chrX:55745200-55781200	Weak transcription	Placenta Amnion	Placenta Amnion
15	chrX:55745200-55785800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chrX:55745400-55758400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chrX:55745400-55758400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chrX:55745400-55762000	Weak transcription	Brain Substantia Nigra	brain
19	chrX:55745400-55762200	Weak transcription	Brain Cingulate Gyrus	brain
20	chrX:55745400-55763200	Weak transcription	Thymus	Thymus
21	chrX:55745400-55763400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chrX:55745400-55763400	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chrX:55745400-55763400	Weak transcription	Right Ventricle	heart
24	chrX:55745400-55764800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chrX:55745400-55765600	Weak transcription	Muscle Satellite Cultured Cells	--
26	chrX:55745400-55766200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chrX:55745400-55769400	Weak transcription	Rectal Smooth Muscle	rectum
28	chrX:55745400-55789800	Weak transcription	NHDF-Ad	bronchial
29	chrX:55745400-55791000	Weak transcription	Psoas Muscle	Psoas
30	chrX:55745400-55791000	Weak transcription	HSMMtube	muscle
31	chrX:55745600-55770800	Weak transcription	K562	blood
32	chrX:55745800-55782800	Weak transcription	Fetal Brain Male	brain
33	chrX:55745800-55792600	Weak transcription	Colon Smooth Muscle	Colon
34	chrX:55745800-55793000	Weak transcription	NH-A	brain
35	chrX:55746000-55790200	Weak transcription	Small Intestine	intestine
36	chrX:55746200-55763400	Weak transcription	HepG2	liver
37	chrX:55746400-55763200	Weak transcription	Fetal Intestine Small	intestine
38	chrX:55746400-55764600	Weak transcription	Fetal Heart	heart
39	chrX:55746600-55757800	Weak transcription	Primary B cells from cord blood	blood
40	chrX:55746800-55759600	Strong transcription	Liver	Liver
41	chrX:55747400-55760000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chrX:55747400-55773800	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chrX:55747600-55759600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chrX:55748600-55761600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chrX:55748800-55767800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chrX:55749200-55758800	Strong transcription	Fetal Intestine Large	intestine
47	chrX:55749400-55784800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chrX:55750200-55763000	Weak transcription	Fetal Stomach	stomach
49	chrX:55750200-55766200	Strong transcription	Dnd41	blood
50	chrX:55750400-55758400	Weak transcription	Ovary	ovary

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