Variant report

Variant	rs4826413
Chromosome Location	chrX:55784054-55784055
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1007153	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12557467	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1325573	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1473760	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17277280	0.93[CEU][hapmap]
rs1927597	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2375466	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4826281	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4826283	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4826287	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5000659	0.93[CEU][hapmap]
rs5913857	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914428	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914433	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914436	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5914440	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5960093	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6611431	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6612417	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs913440	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:55745200-55785800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chrX:55745400-55789800	Weak transcription	NHDF-Ad	bronchial
3	chrX:55745400-55791000	Weak transcription	Psoas Muscle	Psoas
4	chrX:55745400-55791000	Weak transcription	HSMMtube	muscle
5	chrX:55745800-55792600	Weak transcription	Colon Smooth Muscle	Colon
6	chrX:55745800-55793000	Weak transcription	NH-A	brain
7	chrX:55746000-55790200	Weak transcription	Small Intestine	intestine
8	chrX:55749400-55784800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chrX:55758800-55793000	Weak transcription	Osteobl	bone
10	chrX:55760200-55784600	Weak transcription	A549	lung
11	chrX:55765200-55792800	Weak transcription	Fetal Heart	heart
12	chrX:55765800-55787000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chrX:55765800-55791200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chrX:55766000-55788200	Weak transcription	Thymus	Thymus
15	chrX:55766000-55791600	Weak transcription	Gastric	stomach
16	chrX:55766200-55786000	Weak transcription	HepG2	liver
17	chrX:55766200-55786400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chrX:55766200-55786600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chrX:55766200-55793200	Weak transcription	Muscle Satellite Cultured Cells	--
20	chrX:55766200-55793200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chrX:55766200-55793800	Weak transcription	Brain Substantia Nigra	brain
22	chrX:55766200-55810800	Weak transcription	Pancreas	Pancrea
23	chrX:55766400-55787000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chrX:55769800-55785600	Weak transcription	HMEC	breast
25	chrX:55770200-55792200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chrX:55770800-55800600	Weak transcription	Primary T cells fromperipheralblood	blood
27	chrX:55771400-55791000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chrX:55772200-55789600	Weak transcription	Fetal Muscle Trunk	muscle
29	chrX:55772200-55800800	Weak transcription	Spleen	Spleen
30	chrX:55772400-55790000	Weak transcription	Fetal Thymus	thymus
31	chrX:55772600-55787600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chrX:55772600-55788200	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chrX:55772800-55784200	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chrX:55773000-55788800	Weak transcription	Fetal Muscle Leg	muscle
35	chrX:55773000-55805400	Weak transcription	Aorta	Aorta
36	chrX:55773400-55788400	Weak transcription	Fetal Lung	lung
37	chrX:55773600-55786800	Weak transcription	Rectal Smooth Muscle	rectum
38	chrX:55773600-55789800	Weak transcription	Brain Hippocampus Middle	brain
39	chrX:55774800-55791800	Weak transcription	Fetal Stomach	stomach
40	chrX:55774800-55792800	Weak transcription	Fetal Intestine Small	intestine
41	chrX:55775000-55786000	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chrX:55775000-55786600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chrX:55775200-55785200	Weak transcription	H1 Cell Line	embryonic stem cell
44	chrX:55775200-55790000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chrX:55775200-55792800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chrX:55775400-55791800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chrX:55777400-55786400	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chrX:55777600-55791400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chrX:55777800-55785000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chrX:55778000-55785800	Strong transcription	Primary monocytes fromperipheralblood	blood

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