Variant report
| Variant | rs1927597 |
|---|---|
| Chromosome Location | chrX:55662426-55662427 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs1007153 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs12557467 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs1325573 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1473760 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2375465 | 0.85[YRI][hapmap] |
| rs2375466 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs4826281 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs4826283 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs4826287 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs4826413 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs5000659 | 1.00[YRI][hapmap] |
| rs5913857 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs5914428 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs5914432 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs5914433 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs5914436 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs5914440 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs5960093 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs6611431 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs913440 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3410436 | chrX:55229677-55671986 | Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 17 gene(s) | inside rSNPs | diseases |
| 2 | nsv524155 | chrX:55508099-55689174 | Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
