Variant report

Variant	rs59264265
Chromosome Location	chr9:96727919-96727920
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:96727836..96728378-chr9:96975555..96976476,2	MCF-7	breast:
2	chr9:96712713..96719267-chr9:96721537..96727951,10	MCF-7	breast:
3	chr9:96726706..96728615-chr9:96972713..96975369,2	MCF-7	breast:
4	chr9:96727876..96728832-chr9:96764494..96765342,5	MCF-7	breast:
5	chr9:96727798..96728815-chr9:96764497..96765503,14	MCF-7	breast:
6	chr9:96722430..96724465-chr9:96726832..96729189,2	K562	blood:
7	chr9:96726952..96729685-chr9:96738471..96741354,2	K562	blood:
8	chr9:96726783..96728423-chr9:96736812..96738493,2	MCF-7	breast:
9	chr9:96443866..96445187-chr9:96726929..96728716,7	MCF-7	breast:
10	chr9:96718522..96721455-chr9:96725392..96727968,2	MCF-7	breast:
11	chr9:96727259..96729626-chr9:96757236..96759777,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs56948438	1.00[AMR][1000 genomes]
rs56968674	1.00[AMR][1000 genomes]
rs57233442	1.00[AMR][1000 genomes]
rs58181103	1.00[AMR][1000 genomes]
rs58459148	1.00[AMR][1000 genomes]
rs58709329	1.00[AMR][1000 genomes]
rs59050355	1.00[AMR][1000 genomes]
rs59541311	1.00[AMR][1000 genomes]
rs59630172	1.00[AMR][1000 genomes]
rs60051875	1.00[AMR][1000 genomes]
rs60230389	1.00[AMR][1000 genomes]
rs60470247	1.00[AMR][1000 genomes]
rs61384012	1.00[AMR][1000 genomes]
rs73512601	1.00[AMR][1000 genomes]
rs73514228	1.00[AMR][1000 genomes]
rs73514235	1.00[AMR][1000 genomes]
rs73514244	1.00[AMR][1000 genomes]
rs73516177	1.00[AMR][1000 genomes]
rs73516179	1.00[AMR][1000 genomes]
rs73516279	1.00[AMR][1000 genomes]
rs73516289	1.00[AMR][1000 genomes]
rs73516290	1.00[AMR][1000 genomes]
rs73517142	1.00[AMR][1000 genomes]
rs73517166	1.00[AMR][1000 genomes]
rs73517183	1.00[AMR][1000 genomes]
rs73517184	1.00[AMR][1000 genomes]
rs73518259	1.00[AMR][1000 genomes]
rs73518278	1.00[AMR][1000 genomes]
rs73518291	1.00[AMR][1000 genomes]
rs73519488	1.00[AMR][1000 genomes]
rs73520278	1.00[AMR][1000 genomes]
rs73520282	1.00[AMR][1000 genomes]
rs73521324	1.00[AMR][1000 genomes]
rs73521348	1.00[AMR][1000 genomes]
rs73522141	1.00[AMR][1000 genomes]
rs73522157	1.00[AMR][1000 genomes]
rs73522175	1.00[AMR][1000 genomes]
rs73522179	1.00[AMR][1000 genomes]
rs73522182	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv893590	chr9:96701287-96729129	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96723000-96728800	Weak transcription	Pancreas	Pancrea
2	chr9:96723000-96729800	Weak transcription	Gastric	stomach
3	chr9:96725400-96730800	Weak transcription	Stomach Mucosa	stomach
4	chr9:96726600-96730400	Strong transcription	Fetal Stomach	stomach
5	chr9:96726600-96731800	Genic enhancers	Stomach Smooth Muscle	stomach
6	chr9:96727200-96728400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr9:96727400-96729200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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