Variant report

Variant	rs73514244
Chromosome Location	chr9:96671885-96671886
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:96589596..96590325-chr9:96671569..96672287,2	MCF-7	breast:
2	chr9:96460922..96462912-chr9:96670944..96672850,2	K562	blood:
3	chr9:96666065..96667806-chr9:96670157..96672697,2	MCF-7	breast:
4	chr1:233245299..233248254-chr9:96671154..96672728,2	MCF-7	breast:
5	chr9:96671304..96672841-chr9:96674548..96676141,2	MCF-7	breast:
6	chr9:96669102..96671238-chr9:96671311..96673716,2	MCF-7	breast:
7	chr9:96671241..96673198-chr9:96724070..96726611,2	MCF-7	breast:
8	chr9:96670566..96673928-chr9:96676412..96679551,4	K562	blood:
9	chr9:96582571..96583542-chr9:96670824..96672140,6	MCF-7	breast:
10	chr9:96444213..96445067-chr9:96670972..96672102,3	MCF-7	breast:

No data

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs56948438	1.00[AMR][1000 genomes]
rs57233442	1.00[AMR][1000 genomes]
rs58181103	1.00[AMR][1000 genomes]
rs58459148	1.00[AMR][1000 genomes]
rs58709329	1.00[AMR][1000 genomes]
rs59050355	1.00[AMR][1000 genomes]
rs59264265	1.00[AMR][1000 genomes]
rs59541311	1.00[AMR][1000 genomes]
rs59630172	1.00[AMR][1000 genomes]
rs60051875	1.00[AMR][1000 genomes]
rs60230389	1.00[AMR][1000 genomes]
rs60470247	1.00[AMR][1000 genomes]
rs61384012	1.00[AMR][1000 genomes]
rs73512601	1.00[AMR][1000 genomes]
rs73514228	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73514235	1.00[AMR][1000 genomes]
rs73516177	1.00[AMR][1000 genomes]
rs73516179	1.00[AMR][1000 genomes]
rs73516279	1.00[AMR][1000 genomes]
rs73516289	1.00[AMR][1000 genomes]
rs73516290	1.00[AMR][1000 genomes]
rs73517142	1.00[AMR][1000 genomes]
rs73517166	1.00[AMR][1000 genomes]
rs73517183	1.00[AMR][1000 genomes]
rs73517184	1.00[AMR][1000 genomes]
rs73518259	1.00[AMR][1000 genomes]
rs73518278	1.00[AMR][1000 genomes]
rs73518291	1.00[AMR][1000 genomes]
rs73519488	1.00[AMR][1000 genomes]
rs73520278	1.00[AMR][1000 genomes]
rs73520282	1.00[AMR][1000 genomes]
rs73521324	1.00[AMR][1000 genomes]
rs73521348	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1053137	chr9:96644876-96683214	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1046904	chr9:96647940-96689327	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1035418	chr9:96647940-96711409	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Strong transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	esv1801607	chr9:96657324-96683214	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv1042043	chr9:96657324-96689327	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96665400-96674400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:96666000-96674600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:96670800-96672200	Bivalent Enhancer	Stomach Mucosa	stomach
4	chr9:96671000-96672000	Enhancers	Primary B cells from peripheral blood	blood
5	chr9:96671000-96672000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
6	chr9:96671000-96672000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr9:96671000-96675400	Bivalent Enhancer	Fetal Stomach	stomach
8	chr9:96671200-96672000	Enhancers	Primary hematopoietic stem cells	blood
9	chr9:96671200-96672000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr9:96671400-96673400	Enhancers	Stomach Smooth Muscle	stomach
11	chr9:96671400-96674400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr9:96671400-96679600	Weak transcription	Gastric	stomach
13	chr9:96671800-96672000	Enhancers	Fetal Kidney	kidney
14	chr9:96671800-96672200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr9:96671800-96674800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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