Variant report

Variant	rs59541311
Chromosome Location	chr9:96682387-96682388
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:96676732..96679654-chr9:96681245..96683320,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs56948438	1.00[AMR][1000 genomes]
rs57233442	1.00[AMR][1000 genomes]
rs58181103	1.00[AMR][1000 genomes]
rs58459148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58709329	1.00[AMR][1000 genomes]
rs59050355	1.00[AMR][1000 genomes]
rs59264265	1.00[AMR][1000 genomes]
rs59630172	1.00[AMR][1000 genomes]
rs60051875	1.00[AMR][1000 genomes]
rs60230389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60470247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61384012	1.00[AMR][1000 genomes]
rs73512601	1.00[AMR][1000 genomes]
rs73514228	1.00[AMR][1000 genomes]
rs73514235	1.00[AMR][1000 genomes]
rs73514244	1.00[AMR][1000 genomes]
rs73516177	1.00[AMR][1000 genomes]
rs73516179	1.00[AMR][1000 genomes]
rs73516279	1.00[AMR][1000 genomes]
rs73516289	1.00[AMR][1000 genomes]
rs73516290	1.00[AMR][1000 genomes]
rs73517142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73517166	1.00[AMR][1000 genomes]
rs73517183	1.00[AMR][1000 genomes]
rs73517184	1.00[AMR][1000 genomes]
rs73518259	1.00[AMR][1000 genomes]
rs73518278	1.00[AMR][1000 genomes]
rs73518291	1.00[AMR][1000 genomes]
rs73519488	1.00[AMR][1000 genomes]
rs73520278	1.00[AMR][1000 genomes]
rs73520282	1.00[AMR][1000 genomes]
rs73521324	1.00[AMR][1000 genomes]
rs73521348	1.00[AMR][1000 genomes]
rs73522141	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1053137	chr9:96644876-96683214	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1046904	chr9:96647940-96689327	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1035418	chr9:96647940-96711409	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Strong transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	esv1801607	chr9:96657324-96683214	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv1042043	chr9:96657324-96689327	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96677000-96685200	Weak transcription	Spleen	Spleen
2	chr9:96679000-96682600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:96679800-96682400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:96680200-96687200	Weak transcription	Gastric	stomach
5	chr9:96681400-96690600	Weak transcription	Right Atrium	heart
6	chr9:96682200-96684000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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