Variant report

Variant	rs73519488
Chromosome Location	chr9:96724880-96724881
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:96656015..96657684-chr9:96723768..96726547,2	MCF-7	breast:
2	chr9:96712713..96719267-chr9:96721537..96727951,10	MCF-7	breast:
3	chr9:96674702..96676543-chr9:96724873..96726532,2	K562	blood:
4	chr9:96444128..96445167-chr9:96724637..96725907,10	K562	blood:
5	chr9:96447198..96448012-chr9:96724180..96725782,4	MCF-7	breast:
6	chr9:96582631..96583817-chr9:96724571..96725838,5	MCF-7	breast:
7	chr9:96724820..96727040-chr9:96730080..96732897,2	K562	blood:
8	chr9:96576702..96577356-chr9:96724518..96725590,3	MCF-7	breast:
9	chr9:96444184..96445089-chr9:96724737..96725876,7	MCF-7	breast:
10	chr9:96671241..96673198-chr9:96724070..96726611,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs56948438	1.00[AMR][1000 genomes]
rs56968674	1.00[AMR][1000 genomes]
rs57233442	1.00[AMR][1000 genomes]
rs58181103	1.00[AMR][1000 genomes]
rs58459148	1.00[AMR][1000 genomes]
rs58709329	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59050355	1.00[AMR][1000 genomes]
rs59264265	1.00[AMR][1000 genomes]
rs59541311	1.00[AMR][1000 genomes]
rs59630172	1.00[AMR][1000 genomes]
rs60051875	1.00[AMR][1000 genomes]
rs60230389	1.00[AMR][1000 genomes]
rs60470247	1.00[AMR][1000 genomes]
rs61384012	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73512601	1.00[AMR][1000 genomes]
rs73514228	1.00[AMR][1000 genomes]
rs73514235	1.00[AMR][1000 genomes]
rs73514244	1.00[AMR][1000 genomes]
rs73516177	1.00[AMR][1000 genomes]
rs73516179	1.00[AMR][1000 genomes]
rs73516279	1.00[AMR][1000 genomes]
rs73516289	1.00[AMR][1000 genomes]
rs73516290	1.00[AMR][1000 genomes]
rs73517142	1.00[AMR][1000 genomes]
rs73517166	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73517183	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73517184	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73518259	1.00[AMR][1000 genomes]
rs73518278	1.00[AMR][1000 genomes]
rs73518291	1.00[AMR][1000 genomes]
rs73520278	1.00[AMR][1000 genomes]
rs73520282	1.00[AMR][1000 genomes]
rs73521324	1.00[AMR][1000 genomes]
rs73521348	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73522141	1.00[AMR][1000 genomes]
rs73522157	1.00[AMR][1000 genomes]
rs73522175	1.00[AMR][1000 genomes]
rs73522179	1.00[AMR][1000 genomes]
rs73522182	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv824993	chr9:96699362-96725105	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv893590	chr9:96701287-96729129	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96723000-96725800	Flanking Active TSS	Stomach Smooth Muscle	stomach
2	chr9:96723000-96728800	Weak transcription	Pancreas	Pancrea
3	chr9:96723000-96729800	Weak transcription	Gastric	stomach
4	chr9:96723200-96725400	Enhancers	Hela-S3	cervix
5	chr9:96724200-96725400	Enhancers	Stomach Mucosa	stomach
6	chr9:96724200-96725800	Enhancers	Fetal Stomach	stomach
7	chr9:96724600-96725600	Enhancers	Osteobl	bone
8	chr9:96724800-96725000	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
9	chr9:96724800-96725000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr9:96724800-96725200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:96724800-96725200	Enhancers	HUVEC	blood vessel
12	chr9:96724800-96725600	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
13	chr9:96724800-96725800	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr9:96724800-96725800	Enhancers	Colon Smooth Muscle	Colon
15	chr9:96724800-96726400	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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