Variant report

Variant	rs73517183
Chromosome Location	chr9:96710636-96710637
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96710465..96712948-chr9:96713592..96715312,2	MCF-7	breast:
2	chr9:96710015..96712729-chr9:96712737..96714256,2	MCF-7	breast:
3	chr9:96709646..96715968-chr9:96715980..96721050,10	MCF-7	breast:
4	chr9:96705963..96707541-chr9:96709329..96711419,2	MCF-7	breast:
5	chr9:96699994..96702903-chr9:96710019..96711705,2	MCF-7	breast:
6	chr9:96338597..96340419-chr9:96710594..96713429,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197724	Chromatin interaction
ENSG00000131668	Chromatin interaction
ENSG00000235601	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs56948438	1.00[AMR][1000 genomes]
rs56968674	1.00[AMR][1000 genomes]
rs57233442	1.00[AMR][1000 genomes]
rs58181103	1.00[AMR][1000 genomes]
rs58459148	1.00[AMR][1000 genomes]
rs58709329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59050355	1.00[AMR][1000 genomes]
rs59264265	1.00[AMR][1000 genomes]
rs59541311	1.00[AMR][1000 genomes]
rs59630172	1.00[AMR][1000 genomes]
rs60051875	1.00[AMR][1000 genomes]
rs60230389	1.00[AMR][1000 genomes]
rs60470247	1.00[AMR][1000 genomes]
rs61384012	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73512601	1.00[AMR][1000 genomes]
rs73514228	1.00[AMR][1000 genomes]
rs73514235	1.00[AMR][1000 genomes]
rs73514244	1.00[AMR][1000 genomes]
rs73516177	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73516179	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73516279	1.00[AMR][1000 genomes]
rs73516289	1.00[AMR][1000 genomes]
rs73516290	1.00[AMR][1000 genomes]
rs73517142	1.00[AMR][1000 genomes]
rs73517166	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73517184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73518259	1.00[AMR][1000 genomes]
rs73518278	1.00[AMR][1000 genomes]
rs73518291	1.00[AMR][1000 genomes]
rs73519488	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73520278	1.00[AMR][1000 genomes]
rs73520282	1.00[AMR][1000 genomes]
rs73521324	1.00[AMR][1000 genomes]
rs73521348	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73522141	1.00[AMR][1000 genomes]
rs73522157	1.00[AMR][1000 genomes]
rs73522175	1.00[AMR][1000 genomes]
rs73522179	1.00[AMR][1000 genomes]
rs73522182	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1035418	chr9:96647940-96711409	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Strong transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv824993	chr9:96699362-96725105	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv893590	chr9:96701287-96729129	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96708600-96713000	Weak transcription	Gastric	stomach
2	chr9:96709000-96713200	Weak transcription	Right Atrium	heart
3	chr9:96709200-96710800	Weak transcription	Pancreas	Pancrea
4	chr9:96710000-96711000	Bivalent Enhancer	Fetal Stomach	stomach
5	chr9:96710200-96710800	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:96710200-96712400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
7	chr9:96710400-96710800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr9:96710400-96710800	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
9	chr9:96710400-96711200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
10	chr9:96710400-96711200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
11	chr9:96710400-96711400	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
12	chr9:96710400-96711400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr9:96710400-96712000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr9:96710400-96712200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
15	chr9:96710400-96712200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr9:96710400-96712200	Flanking Active TSS	Stomach Smooth Muscle	stomach
17	chr9:96710400-96713000	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
18	chr9:96710600-96710800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
19	chr9:96710600-96711000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
20	chr9:96710600-96711000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
21	chr9:96710600-96711200	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
22	chr9:96710600-96711400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr9:96710600-96711600	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
24	chr9:96710600-96711800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
25	chr9:96710600-96712000	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
26	chr9:96710600-96712200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
27	chr9:96710600-96713800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell

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