Variant report
| Variant | rs73516177 |
|---|---|
| Chromosome Location | chr9:96679551-96679552 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:96678251..96680846-chr9:96690063..96691952,2 | MCF-7 | breast: | |
| 2 | chr9:96670566..96673928-chr9:96676412..96679551,4 | K562 | blood: | |
| 3 | chr9:96676732..96679654-chr9:96681245..96683320,2 | MCF-7 | breast: | |
| 4 | chr9:96673909..96678084-chr9:96678410..96682250,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs56948438 | 1.00[AMR][1000 genomes] |
| rs57233442 | 1.00[AMR][1000 genomes] |
| rs58181103 | 1.00[AMR][1000 genomes] |
| rs58459148 | 1.00[AMR][1000 genomes] |
| rs58709329 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59050355 | 1.00[AMR][1000 genomes] |
| rs59264265 | 1.00[AMR][1000 genomes] |
| rs59541311 | 1.00[AMR][1000 genomes] |
| rs59630172 | 1.00[AMR][1000 genomes] |
| rs60051875 | 1.00[AMR][1000 genomes] |
| rs60230389 | 1.00[AMR][1000 genomes] |
| rs60470247 | 1.00[AMR][1000 genomes] |
| rs61384012 | 1.00[AMR][1000 genomes] |
| rs73512601 | 1.00[AMR][1000 genomes] |
| rs73514228 | 1.00[AMR][1000 genomes] |
| rs73514235 | 1.00[AMR][1000 genomes] |
| rs73514244 | 1.00[AMR][1000 genomes] |
| rs73516179 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73516279 | 1.00[AMR][1000 genomes] |
| rs73516289 | 1.00[AMR][1000 genomes] |
| rs73516290 | 1.00[AMR][1000 genomes] |
| rs73517142 | 1.00[AMR][1000 genomes] |
| rs73517166 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73517183 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73517184 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73518259 | 1.00[AMR][1000 genomes] |
| rs73518278 | 1.00[AMR][1000 genomes] |
| rs73518291 | 1.00[AMR][1000 genomes] |
| rs73519488 | 1.00[AMR][1000 genomes] |
| rs73520278 | 1.00[AMR][1000 genomes] |
| rs73520282 | 1.00[AMR][1000 genomes] |
| rs73521324 | 1.00[AMR][1000 genomes] |
| rs73521348 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73522141 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv893589 | chr9:96624645-96884544 | Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv1053137 | chr9:96644876-96683214 | Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS | Chromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv1046904 | chr9:96647940-96689327 | Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh | Chromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv1035418 | chr9:96647940-96711409 | Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Strong transcription | Chromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 5 | esv1801607 | chr9:96657324-96683214 | Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 6 | nsv1042043 | chr9:96657324-96689327 | Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | Chromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 7 | esv3356472 | chr9:96677831-96682029 | Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:96671400-96679600 | Weak transcription | Gastric | stomach |
| 2 | chr9:96677000-96685200 | Weak transcription | Spleen | Spleen |
| 3 | chr9:96679000-96680000 | Enhancers | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 4 | chr9:96679000-96682600 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
