Variant report

Variant	rs59413458
Chromosome Location	chr6:161528531-161528532
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs55683369	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55813371	1.00[AMR][1000 genomes]
rs55925816	1.00[EUR][1000 genomes]
rs56024080	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56288506	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56335955	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56655389	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56691844	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57028833	1.00[AMR][1000 genomes]
rs57850413	1.00[EUR][1000 genomes]
rs58008940	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59028741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59165451	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59302035	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60747861	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6939921	1.00[EUR][1000 genomes]
rs73782389	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73782393	1.00[EUR][1000 genomes]
rs73782398	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73782399	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784708	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784709	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784712	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784723	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784725	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784730	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784733	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784739	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784742	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784743	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784750	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784754	1.00[EUR][1000 genomes]
rs73784788	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784791	1.00[EUR][1000 genomes]
rs73784796	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73786003	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030045	chr6:161359075-161562255	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1023982	chr6:161382188-161549831	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv1030852	chr6:161477750-161589394	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161491000-161538400	Strong transcription	Primary B cells from peripheral blood	blood
2	chr6:161491600-161528800	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr6:161491600-161529000	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr6:161491600-161539800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:161494400-161542400	Strong transcription	Duodenum Mucosa	Duodenum
6	chr6:161495200-161538000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:161496000-161539800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:161497800-161539600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:161498000-161541800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr6:161499000-161531800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr6:161500200-161540400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:161500600-161539800	Strong transcription	Rectal Mucosa Donor 29	rectum
13	chr6:161500600-161541800	Strong transcription	K562	blood
14	chr6:161500800-161538200	Strong transcription	Primary B cells from cord blood	blood
15	chr6:161502600-161531600	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr6:161503200-161532000	Strong transcription	Primary T helper cells PMA-I stimulated	--
17	chr6:161504800-161531800	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr6:161505800-161529800	Weak transcription	Fetal Brain Male	brain
19	chr6:161510600-161529000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr6:161510600-161531600	Weak transcription	Stomach Mucosa	stomach
21	chr6:161510800-161537400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr6:161514000-161544600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:161514400-161539800	Strong transcription	Left Ventricle	heart
24	chr6:161514600-161541000	Strong transcription	Fetal Intestine Large	intestine
25	chr6:161517000-161539600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr6:161517600-161543000	Strong transcription	Skeletal Muscle Female	skeletal muscle
27	chr6:161517800-161540400	Strong transcription	HUES64 Cell Line	embryonic stem cell
28	chr6:161517800-161542200	Strong transcription	Liver	Liver
29	chr6:161518000-161534800	Strong transcription	Brain Anterior Caudate	brain
30	chr6:161518000-161537200	Strong transcription	Rectal Mucosa Donor 31	rectum
31	chr6:161518000-161538200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr6:161518000-161538600	Strong transcription	Fetal Stomach	stomach
33	chr6:161518000-161539600	Strong transcription	Fetal Muscle Leg	muscle
34	chr6:161518000-161540000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
35	chr6:161518000-161540800	Strong transcription	Duodenum Smooth Muscle	Duodenum
36	chr6:161518000-161541400	Strong transcription	HUES6 Cell Line	embryonic stem cell
37	chr6:161518200-161539800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr6:161519600-161528800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr6:161519800-161530800	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr6:161521600-161539600	Weak transcription	Hela-S3	cervix
41	chr6:161522400-161531600	Strong transcription	Fetal Thymus	thymus
42	chr6:161522400-161542400	Strong transcription	Stomach Smooth Muscle	stomach
43	chr6:161522600-161535400	Strong transcription	HUVEC	blood vessel
44	chr6:161523400-161536200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr6:161523800-161540800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr6:161524000-161535400	Strong transcription	Sigmoid Colon	Sigmoid Colon
47	chr6:161524400-161534400	Strong transcription	Psoas Muscle	Psoas
48	chr6:161524400-161540000	Strong transcription	HepG2	liver
49	chr6:161525200-161529000	Weak transcription	A549	lung
50	chr6:161525800-161528600	Enhancers	HMEC	breast

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