Variant report

Variant	rs73784708
Chromosome Location	chr6:161431103-161431104
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:161429995..161433253-chr6:161449573..161453041,3	MCF-7	breast:
2	chr6:161411663..161414385-chr6:161429891..161432608,3	K562	blood:
3	chr6:161412828..161414850-chr6:161429891..161432608,3	K562	blood:
4	chr6:161422502..161428879-chr6:161429746..161435781,7	K562	blood:

Variant related genes	Relation type
ENSG00000272841	Chromatin interaction
ENSG00000085511	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs55683369	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55813371	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55925816	1.00[EUR][1000 genomes]
rs56024080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56288506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56335955	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56655389	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56691844	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57028833	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57850413	1.00[EUR][1000 genomes]
rs58008940	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59028741	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59165451	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59302035	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59413458	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60747861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6939921	1.00[EUR][1000 genomes]
rs73782389	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73782393	1.00[EUR][1000 genomes]
rs73782398	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73782399	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784709	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784723	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784725	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784730	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784733	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784739	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784741	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784742	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784743	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784750	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784754	1.00[EUR][1000 genomes]
rs73784788	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784791	1.00[EUR][1000 genomes]
rs73784796	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73786003	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422347	chr6:161211171-161442377	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1030045	chr6:161359075-161562255	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv1023982	chr6:161382188-161549831	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161413800-161432000	Weak transcription	Aorta	Aorta
2	chr6:161413800-161433000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:161414000-161432000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:161414200-161431600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:161414200-161431600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr6:161414200-161458200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:161414400-161469600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:161414600-161432800	Weak transcription	Fetal Stomach	stomach
9	chr6:161414600-161442600	Weak transcription	Primary B cells from cord blood	blood
10	chr6:161414600-161457400	Weak transcription	Primary hematopoietic stem cells	blood
11	chr6:161415600-161450000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr6:161416600-161475200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr6:161416800-161436200	Weak transcription	Fetal Intestine Small	intestine
14	chr6:161417400-161449000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:161417800-161433600	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr6:161418000-161432000	Weak transcription	Small Intestine	intestine
17	chr6:161418000-161432800	Weak transcription	Esophagus	oesophagus
18	chr6:161418000-161432800	Weak transcription	Right Atrium	heart
19	chr6:161418000-161434800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr6:161418000-161448800	Weak transcription	Lung	lung
21	chr6:161418800-161432400	Weak transcription	Ovary	ovary
22	chr6:161420000-161434800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr6:161420800-161431800	Weak transcription	Fetal Lung	lung
24	chr6:161422800-161431200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr6:161422800-161431200	Weak transcription	HMEC	breast
26	chr6:161422800-161432000	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr6:161422800-161433600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr6:161422800-161434600	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr6:161422800-161441000	Weak transcription	K562	blood
30	chr6:161423000-161431200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr6:161423000-161431200	Weak transcription	HSMM	muscle
32	chr6:161423000-161431800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr6:161423000-161431800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr6:161423000-161431800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr6:161423000-161431800	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr6:161423000-161443000	Weak transcription	HepG2	liver
37	chr6:161423200-161433600	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr6:161423200-161436200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr6:161423400-161432000	Weak transcription	Fetal Heart	heart
40	chr6:161424600-161431800	Weak transcription	NHLF	lung
41	chr6:161424800-161431200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr6:161424800-161431200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr6:161424800-161431600	Weak transcription	Colon Smooth Muscle	Colon
44	chr6:161424800-161431800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr6:161424800-161431800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr6:161428200-161431800	Weak transcription	Brain Angular Gyrus	brain
47	chr6:161428400-161431200	Weak transcription	Osteobl	bone
48	chr6:161428400-161432000	Weak transcription	Psoas Muscle	Psoas
49	chr6:161428400-161432800	Weak transcription	Left Ventricle	heart
50	chr6:161428600-161431400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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