Variant report

Variant	rs73782389
Chromosome Location	chr6:161376422-161376423
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:161375159..161377891-chr6:161412077..161413734,2	MCF-7	breast:
2	chr6:161375051..161376590-chr6:161572468..161574179,2	K562	blood:

Variant related genes	Relation type
ENSG00000085511	Chromatin interaction
ENSG00000272841	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs55683369	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55813371	1.00[AMR][1000 genomes]
rs55925816	1.00[EUR][1000 genomes]
rs56024080	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56288506	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56335955	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56655389	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56691844	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57028833	1.00[AMR][1000 genomes]
rs57850413	1.00[EUR][1000 genomes]
rs58008940	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59028741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59165451	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59302035	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59413458	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60747861	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6939921	1.00[EUR][1000 genomes]
rs73782393	1.00[EUR][1000 genomes]
rs73782398	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73782399	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784708	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784709	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784712	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784723	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784725	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784730	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784733	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784739	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784742	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784743	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784750	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784754	1.00[EUR][1000 genomes]
rs73784788	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784791	1.00[EUR][1000 genomes]
rs73784796	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73786003	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830853	chr6:161180005-161376481	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2422347	chr6:161211171-161442377	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1030045	chr6:161359075-161562255	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161372600-161377200	Weak transcription	Esophagus	oesophagus
2	chr6:161372800-161394000	Weak transcription	Right Atrium	heart
3	chr6:161374200-161380800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:161374400-161380200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr6:161374400-161380600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:161374600-161377000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:161374600-161381000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr6:161374800-161380200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:161374800-161380200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:161375200-161378200	Enhancers	Placenta	Placenta
11	chr6:161375600-161380000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:161376200-161376600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:161376400-161376800	Flanking Active TSS	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links