Variant report

Variant	rs73784739
Chromosome Location	chr6:161492991-161492992
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr6:161492936-161493118	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:161483885..161486515-chr6:161491097..161493545,2	K562	blood:
2	chr6:161423600..161427272-chr6:161490339..161493593,3	K562	blood:
3	chr6:161491365..161493200-chr6:161495759..161498735,2	K562	blood:

Variant related genes	Relation type
MAP3K4	TF binding region

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs55683369	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55813371	1.00[AMR][1000 genomes]
rs55925816	1.00[EUR][1000 genomes]
rs56024080	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56288506	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56335955	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56655389	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56691844	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57028833	1.00[AMR][1000 genomes]
rs57850413	1.00[EUR][1000 genomes]
rs58008940	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59028741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59165451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59302035	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59413458	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60747861	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6939921	1.00[EUR][1000 genomes]
rs73782389	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73782393	1.00[EUR][1000 genomes]
rs73782398	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73782399	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784708	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784709	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784712	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784723	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784725	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784730	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784733	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784743	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784754	1.00[EUR][1000 genomes]
rs73784788	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784791	1.00[EUR][1000 genomes]
rs73784796	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73786003	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030045	chr6:161359075-161562255	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1023982	chr6:161382188-161549831	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv1030852	chr6:161477750-161589394	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161449000-161494400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr6:161453600-161506600	Weak transcription	Small Intestine	intestine
3	chr6:161455200-161495800	Weak transcription	Fetal Brain Male	brain
4	chr6:161456400-161501600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:161459400-161508800	Weak transcription	Hela-S3	cervix
6	chr6:161459800-161496600	Weak transcription	Fetal Kidney	kidney
7	chr6:161459800-161502800	Weak transcription	HUVEC	blood vessel
8	chr6:161460000-161499200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr6:161460600-161495600	Weak transcription	HSMMtube	muscle
10	chr6:161462800-161497200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr6:161462800-161497800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:161462800-161508200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:161463600-161495600	Weak transcription	Pancreas	Pancrea
14	chr6:161463800-161499200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:161470400-161495000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr6:161470600-161493800	Weak transcription	Fetal Thymus	thymus
17	chr6:161470600-161508000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr6:161471000-161503800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr6:161471200-161494400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:161471400-161500600	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr6:161471600-161494400	Weak transcription	Osteobl	bone
22	chr6:161473000-161495000	Weak transcription	Adipose Nuclei	Adipose
23	chr6:161473000-161495600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:161473200-161496200	Weak transcription	Psoas Muscle	Psoas
25	chr6:161473800-161494200	Weak transcription	HepG2	liver
26	chr6:161477800-161495600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr6:161478400-161501400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr6:161479400-161497000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr6:161480200-161500800	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr6:161482200-161496400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr6:161482600-161494400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr6:161482800-161498200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr6:161482800-161499200	Weak transcription	Primary hematopoietic stem cells	blood
34	chr6:161484200-161495000	Weak transcription	Rectal Smooth Muscle	rectum
35	chr6:161485800-161496600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr6:161486200-161494000	Weak transcription	GM12878-XiMat	blood
37	chr6:161486200-161495000	Weak transcription	Esophagus	oesophagus
38	chr6:161486200-161495000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr6:161486200-161496400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr6:161486200-161496600	Weak transcription	Left Ventricle	heart
41	chr6:161486200-161499200	Weak transcription	Gastric	stomach
42	chr6:161486200-161499200	Weak transcription	Spleen	Spleen
43	chr6:161486200-161519200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr6:161486400-161494400	Weak transcription	Primary B cells from cord blood	blood
45	chr6:161486400-161497200	Weak transcription	Aorta	Aorta
46	chr6:161487800-161494400	Weak transcription	HMEC	breast
47	chr6:161487800-161501000	Weak transcription	NHEK	skin
48	chr6:161488000-161499200	Weak transcription	Colon Smooth Muscle	Colon
49	chr6:161488000-161501800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr6:161488200-161501600	Weak transcription	NHDF-Ad	bronchial

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