Variant report

Variant	rs73782393
Chromosome Location	chr6:161386820-161386821
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:161377508..161379938-chr6:161386154..161388991,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs55683369	1.00[EUR][1000 genomes]
rs55925816	1.00[EUR][1000 genomes]
rs56024080	1.00[EUR][1000 genomes]
rs56288506	1.00[EUR][1000 genomes]
rs56335955	1.00[EUR][1000 genomes]
rs56655389	1.00[EUR][1000 genomes]
rs56691844	1.00[EUR][1000 genomes]
rs57850413	1.00[EUR][1000 genomes]
rs58008940	1.00[EUR][1000 genomes]
rs59028741	1.00[EUR][1000 genomes]
rs59165451	1.00[EUR][1000 genomes]
rs59302035	1.00[EUR][1000 genomes]
rs59413458	1.00[EUR][1000 genomes]
rs60747861	1.00[EUR][1000 genomes]
rs6939921	1.00[EUR][1000 genomes]
rs73782389	1.00[EUR][1000 genomes]
rs73782398	1.00[EUR][1000 genomes]
rs73782399	1.00[EUR][1000 genomes]
rs73784708	1.00[EUR][1000 genomes]
rs73784709	1.00[EUR][1000 genomes]
rs73784712	1.00[EUR][1000 genomes]
rs73784723	1.00[EUR][1000 genomes]
rs73784725	1.00[EUR][1000 genomes]
rs73784730	1.00[EUR][1000 genomes]
rs73784733	1.00[EUR][1000 genomes]
rs73784739	1.00[EUR][1000 genomes]
rs73784741	1.00[EUR][1000 genomes]
rs73784742	1.00[EUR][1000 genomes]
rs73784743	1.00[EUR][1000 genomes]
rs73784750	1.00[EUR][1000 genomes]
rs73784754	1.00[EUR][1000 genomes]
rs73784788	1.00[EUR][1000 genomes]
rs73784791	1.00[EUR][1000 genomes]
rs73784796	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422347	chr6:161211171-161442377	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1030045	chr6:161359075-161562255	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv1023982	chr6:161382188-161549831	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161372800-161394000	Weak transcription	Right Atrium	heart
2	chr6:161382400-161389800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:161384200-161387200	Enhancers	Brain Germinal Matrix	brain
4	chr6:161385600-161388600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:161386800-161388600	Weak transcription	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links