Variant report

Variant	rs73784709
Chromosome Location	chr6:161432470-161432471
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:161425971..161428615-chr6:161431158..161434140,4	K562	blood:
2	chr6:161429995..161433253-chr6:161449573..161453041,3	MCF-7	breast:
3	chr6:161411663..161414385-chr6:161429891..161432608,3	K562	blood:
4	chr6:161412828..161414850-chr6:161429891..161432608,3	K562	blood:
5	chr6:161417175..161419433-chr6:161431394..161434552,3	K562	blood:
6	chr6:161422502..161428879-chr6:161429746..161435781,7	K562	blood:

Variant related genes	Relation type
ENSG00000085511	Chromatin interaction
ENSG00000272841	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs55683369	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55813371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55925816	1.00[EUR][1000 genomes]
rs56024080	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56288506	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56335955	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56655389	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56691844	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57028833	1.00[AMR][1000 genomes]
rs57850413	1.00[EUR][1000 genomes]
rs58008940	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59028741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59165451	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59302035	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59413458	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60747861	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6939921	1.00[EUR][1000 genomes]
rs73782389	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73782393	1.00[EUR][1000 genomes]
rs73782398	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73782399	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784708	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784712	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784723	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784725	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784730	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784733	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784739	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784742	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784743	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784750	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784754	1.00[EUR][1000 genomes]
rs73784788	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784791	1.00[EUR][1000 genomes]
rs73784796	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73786003	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422347	chr6:161211171-161442377	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1030045	chr6:161359075-161562255	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv1023982	chr6:161382188-161549831	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161413800-161433000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:161414200-161458200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr6:161414400-161469600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr6:161414600-161432800	Weak transcription	Fetal Stomach	stomach
5	chr6:161414600-161442600	Weak transcription	Primary B cells from cord blood	blood
6	chr6:161414600-161457400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:161415600-161450000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr6:161416600-161475200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr6:161416800-161436200	Weak transcription	Fetal Intestine Small	intestine
10	chr6:161417400-161449000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:161417800-161433600	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr6:161418000-161432800	Weak transcription	Esophagus	oesophagus
13	chr6:161418000-161432800	Weak transcription	Right Atrium	heart
14	chr6:161418000-161434800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr6:161418000-161448800	Weak transcription	Lung	lung
16	chr6:161420000-161434800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr6:161422800-161433600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr6:161422800-161434600	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr6:161422800-161441000	Weak transcription	K562	blood
20	chr6:161423000-161443000	Weak transcription	HepG2	liver
21	chr6:161423200-161433600	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr6:161423200-161436200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr6:161428400-161432800	Weak transcription	Left Ventricle	heart
24	chr6:161428600-161455800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr6:161430800-161433000	Enhancers	H1 Cell Line	embryonic stem cell
26	chr6:161430800-161435200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr6:161431000-161432600	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr6:161431000-161432800	Weak transcription	Pancreas	Pancrea
29	chr6:161431000-161433800	Enhancers	Muscle Satellite Cultured Cells	--
30	chr6:161431000-161442400	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr6:161431200-161433800	Enhancers	NH-A	brain
32	chr6:161431200-161433800	Enhancers	NHDF-Ad	bronchial
33	chr6:161431200-161434200	Enhancers	Osteobl	bone
34	chr6:161431200-161434400	Enhancers	Pancreatic Islets	Pancreatic Islet
35	chr6:161431200-161434800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr6:161431200-161435000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
37	chr6:161431400-161433200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr6:161431400-161435000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr6:161431600-161432600	Enhancers	Adipose Nuclei	Adipose
40	chr6:161431600-161432800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr6:161431600-161433200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
42	chr6:161431600-161433800	Enhancers	Cortex derived primary cultured neurospheres	brain
43	chr6:161431600-161434000	Enhancers	Rectal Smooth Muscle	rectum
44	chr6:161431600-161434600	Enhancers	Colon Smooth Muscle	Colon
45	chr6:161431800-161432600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr6:161431800-161432600	Weak transcription	Brain Anterior Caudate	brain
47	chr6:161431800-161433000	Enhancers	HSMM	muscle
48	chr6:161431800-161433200	Enhancers	Breast Myoepithelial Primary Cells	Breast
49	chr6:161431800-161433200	Enhancers	NHLF	lung
50	chr6:161431800-161433400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell

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