Variant report

Variant	rs59560107
Chromosome Location	chr2:37649134-37649135
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10173794	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12617664	0.96[ASN][1000 genomes]
rs12620578	0.96[ASN][1000 genomes]
rs17020706	0.95[ASN][1000 genomes]
rs2058717	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4670704	0.81[EUR][1000 genomes]
rs4670708	0.97[ASN][1000 genomes]
rs56107750	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59966191	0.81[ASN][1000 genomes]
rs72792867	0.80[ASN][1000 genomes]
rs7587134	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833814	chr2:37643132-37840247	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37643200-37651200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:37648400-37649200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr2:37648800-37649400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr2:37648800-37649400	Flanking Active TSS	NHDF-Ad	bronchial
5	chr2:37648800-37649600	Enhancers	Fetal Kidney	kidney
6	chr2:37648800-37649600	Enhancers	Fetal Stomach	stomach
7	chr2:37649000-37649400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr2:37649000-37649600	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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