Variant report

Variant	rs4670704
Chromosome Location	chr2:37624886-37624887
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10173794	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10490445	1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2058717	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4670198	0.89[ASN][1000 genomes]
rs4670200	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs4670703	0.90[ASN][1000 genomes]
rs56107750	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59560107	0.81[EUR][1000 genomes]
rs72792867	0.86[ASN][1000 genomes]
rs7564835	0.90[ASN][1000 genomes]
rs7567553	0.92[ASN][1000 genomes]
rs7587134	0.81[EUR][1000 genomes]
rs870803	0.89[ASN][1000 genomes]
rs870804	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430724	chr2:37546820-37628704	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37620600-37625600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr2:37623400-37625000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr2:37623400-37628200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:37623400-37629400	Weak transcription	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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