Variant report

Variant	rs7564835
Chromosome Location	chr2:37616041-37616042
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37445368..37447696-chr2:37615687..37618666,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10173794	0.87[ASN][1000 genomes]
rs10490445	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11886889	0.84[EUR][1000 genomes]
rs12615162	0.86[EUR][1000 genomes]
rs17020706	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4510203	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4670198	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4670703	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4670704	0.90[ASN][1000 genomes]
rs4670708	0.80[ASN][1000 genomes]
rs58027408	0.80[ASN][1000 genomes]
rs58864283	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72792862	0.84[EUR][1000 genomes]
rs72792863	0.84[EUR][1000 genomes]
rs72792867	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7567553	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs870803	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs870804	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430724	chr2:37546820-37628704	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37604600-37616800	Weak transcription	Adipose Nuclei	Adipose
2	chr2:37607400-37618200	Weak transcription	Right Atrium	heart
3	chr2:37609200-37616600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr2:37609200-37616800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr2:37611800-37616800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr2:37612200-37616600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr2:37613600-37618400	Enhancers	NHDF-Ad	bronchial
8	chr2:37613800-37617200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr2:37614000-37617400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr2:37614200-37617200	Enhancers	NHEK	skin
11	chr2:37614200-37617400	Enhancers	NHLF	lung
12	chr2:37614200-37618400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr2:37614200-37618600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr2:37614200-37618600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr2:37614400-37618400	Enhancers	HMEC	breast
16	chr2:37614600-37617000	Weak transcription	Fetal Muscle Leg	muscle
17	chr2:37614600-37617200	Enhancers	HUVEC	blood vessel
18	chr2:37614800-37616600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr2:37614800-37617200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr2:37614800-37623000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr2:37615000-37617000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr2:37615000-37617200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr2:37615000-37618800	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr2:37615200-37616400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr2:37615200-37616400	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr2:37615200-37617000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr2:37615200-37617000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr2:37615200-37617000	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr2:37615200-37618600	Enhancers	Osteobl	bone
30	chr2:37615200-37619200	Enhancers	Primary B cells from peripheral blood	blood
31	chr2:37615400-37617000	Weak transcription	HSMMtube	muscle
32	chr2:37615400-37618600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
33	chr2:37615600-37616600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr2:37615600-37616600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr2:37615600-37616600	Weak transcription	Esophagus	oesophagus
36	chr2:37615600-37616600	Weak transcription	NH-A	brain
37	chr2:37615600-37616800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr2:37615600-37616800	Weak transcription	HSMM	muscle
39	chr2:37615600-37617000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr2:37615600-37617000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr2:37615600-37617400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr2:37615800-37616200	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr2:37615800-37618600	Enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr2:37616000-37618000	Enhancers	Spleen	Spleen
45	chr2:37616000-37618400	Enhancers	Primary T killer memory cells from peripheral blood	blood
46	chr2:37616000-37619000	Enhancers	Primary B cells from cord blood	blood
47	chr2:37616000-37619800	Enhancers	Primary monocytes fromperipheralblood	blood

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