Variant report

Variant	rs72792863
Chromosome Location	chr2:37606628-37606629
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10490445	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11886889	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12615162	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12617664	0.87[AMR][1000 genomes]
rs12620578	0.87[AMR][1000 genomes]
rs17020706	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2041841	0.97[ASN][1000 genomes]
rs4510203	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4670198	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4670703	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4670708	0.91[AMR][1000 genomes]
rs4670709	0.91[AMR][1000 genomes]
rs58027408	0.94[ASN][1000 genomes]
rs58137025	0.84[ASN][1000 genomes]
rs58864283	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72792862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72792867	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7564835	0.84[EUR][1000 genomes]
rs7567553	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7596962	0.81[ASN][1000 genomes]
rs870803	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs870804	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430724	chr2:37546820-37628704	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37577400-37607000	Weak transcription	Spleen	Spleen
2	chr2:37583600-37607200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr2:37602600-37607600	Enhancers	Osteobl	bone
4	chr2:37603400-37606800	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr2:37603600-37607400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr2:37603800-37607200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr2:37604000-37607800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr2:37604200-37607000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr2:37604600-37607400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr2:37604600-37607400	Enhancers	HMEC	breast
11	chr2:37604600-37607600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr2:37604600-37616800	Weak transcription	Adipose Nuclei	Adipose
13	chr2:37605000-37608200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr2:37605200-37607400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr2:37605200-37607400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr2:37605400-37611400	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr2:37605800-37606800	Weak transcription	Primary B cells from peripheral blood	blood
18	chr2:37605800-37606800	Weak transcription	Colon Smooth Muscle	Colon
19	chr2:37605800-37606800	Weak transcription	GM12878-XiMat	blood
20	chr2:37605800-37607000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr2:37605800-37611200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr2:37605800-37613800	Weak transcription	HSMMtube	muscle
23	chr2:37605800-37614200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr2:37606000-37607000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr2:37606000-37607000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr2:37606000-37607000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr2:37606000-37607000	Weak transcription	HSMM	muscle
28	chr2:37606000-37607000	Weak transcription	NHDF-Ad	bronchial
29	chr2:37606000-37607200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr2:37606000-37614200	Weak transcription	NHLF	lung
31	chr2:37606400-37606800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr2:37606400-37606800	Weak transcription	NH-A	brain
33	chr2:37606400-37607800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr2:37606400-37610000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr2:37606600-37606800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr2:37606600-37608000	Enhancers	HUVEC	blood vessel
37	chr2:37606600-37608200	Enhancers	Primary B cells from cord blood	blood

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