Variant report

Variant	rs870803
Chromosome Location	chr2:37613721-37613722
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10173794	0.89[ASN][1000 genomes]
rs10490445	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11886889	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12615162	0.86[EUR][1000 genomes]
rs12617664	0.80[ASN][1000 genomes]
rs17020706	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2041841	0.81[ASN][1000 genomes]
rs2058717	0.81[ASN][1000 genomes]
rs4510203	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4670198	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4670703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4670704	0.89[ASN][1000 genomes]
rs4670708	0.82[ASN][1000 genomes]
rs56107750	0.80[ASN][1000 genomes]
rs58027408	0.85[ASN][1000 genomes]
rs58864283	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72792862	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72792863	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72792867	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7564835	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7567553	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs870804	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430724	chr2:37546820-37628704	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37604600-37616800	Weak transcription	Adipose Nuclei	Adipose
2	chr2:37605800-37613800	Weak transcription	HSMMtube	muscle
3	chr2:37605800-37614200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:37606000-37614200	Weak transcription	NHLF	lung
5	chr2:37607400-37614000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr2:37607400-37614200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr2:37607400-37618200	Weak transcription	Right Atrium	heart
8	chr2:37607600-37614600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr2:37609200-37615200	Weak transcription	Primary B cells from peripheral blood	blood
10	chr2:37609200-37616600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr2:37609200-37616800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr2:37611400-37615600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr2:37611800-37614200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr2:37611800-37616800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr2:37612000-37614400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr2:37612200-37616600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr2:37612600-37613800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr2:37613600-37614400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr2:37613600-37618400	Enhancers	NHDF-Ad	bronchial

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