Variant report

Variant	rs12615162
Chromosome Location	chr2:37609102-37609103
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10490445	0.84[EUR][1000 genomes]
rs11886889	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12617664	0.82[AMR][1000 genomes]
rs12620578	0.82[AMR][1000 genomes]
rs17020706	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2041841	0.88[ASN][1000 genomes]
rs4510203	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4670198	0.86[EUR][1000 genomes]
rs4670703	0.88[EUR][1000 genomes]
rs4670708	0.86[AMR][1000 genomes]
rs4670709	0.86[AMR][1000 genomes]
rs58027408	0.89[ASN][1000 genomes]
rs58864283	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72792862	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72792863	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72792867	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7564835	0.86[EUR][1000 genomes]
rs7567553	0.86[EUR][1000 genomes]
rs870803	0.86[EUR][1000 genomes]
rs870804	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430724	chr2:37546820-37628704	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37604600-37616800	Weak transcription	Adipose Nuclei	Adipose
2	chr2:37605400-37611400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr2:37605800-37611200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:37605800-37613800	Weak transcription	HSMMtube	muscle
5	chr2:37605800-37614200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:37606000-37614200	Weak transcription	NHLF	lung
7	chr2:37606400-37610000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr2:37607400-37611400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr2:37607400-37614000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr2:37607400-37614200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr2:37607400-37618200	Weak transcription	Right Atrium	heart
12	chr2:37607600-37609400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr2:37607600-37613600	Weak transcription	NHDF-Ad	bronchial
14	chr2:37607600-37614600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr2:37608000-37609200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr2:37608200-37611400	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr2:37608200-37611400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr2:37608600-37609800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr2:37608800-37609200	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr2:37608800-37609200	Enhancers	Primary B cells from peripheral blood	blood

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