Variant report

Variant	rs17020706
Chromosome Location	chr2:37641790-37641791
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:37641315..37642167-chr2:38104374..38104906,2	K562	blood:
2	chr2:37641113..37643147-chr2:38035425..38037693,2	MCF-7	breast:
3	chr2:37641523..37642298-chr2:38059393..38060316,7	MCF-7	breast:
4	chr2:37641268..37641936-chr2:38036302..38037241,5	MCF-7	breast:
5	chr2:37641634..37642205-chr2:38036388..38037178,2	MCF-7	breast:
6	chr2:37641385..37643169-chr2:38059236..38060312,7	MCF-7	breast:
7	chr2:37635921..37638879-chr2:37639568..37642388,3	K562	blood:
8	chr2:37641637..37642468-chr2:38059074..38060579,6	K562	blood:
9	chr2:37641025..37642551-chr2:38057103..38058759,2	MCF-7	breast:
10	chr2:37617148..37619096-chr2:37640287..37642419,2	K562	blood:

No data

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10173794	0.89[ASN][1000 genomes]
rs10490445	0.91[CHB][hapmap];0.83[ASN][1000 genomes]
rs11886889	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12615162	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12617664	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12620578	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2058717	0.93[ASN][1000 genomes]
rs4510203	0.87[EUR][1000 genomes]
rs4670198	0.83[ASN][1000 genomes]
rs4670703	0.82[ASN][1000 genomes]
rs4670708	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4670709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56107750	0.90[ASN][1000 genomes]
rs58864283	0.87[EUR][1000 genomes]
rs59560107	0.95[ASN][1000 genomes]
rs72792862	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72792863	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72792867	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7564835	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7567553	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7587134	0.94[ASN][1000 genomes]
rs870803	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs870804	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37625600-37641800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr2:37639600-37641800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr2:37639600-37641800	Weak transcription	Fetal Brain Female	brain
4	chr2:37639600-37641800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr2:37639600-37641800	Weak transcription	HSMMtube	muscle
6	chr2:37639800-37641800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr2:37639800-37641800	Weak transcription	HSMM	muscle
8	chr2:37640000-37642600	Enhancers	Rectal Smooth Muscle	rectum
9	chr2:37640400-37641800	Enhancers	Fetal Heart	heart
10	chr2:37640600-37642600	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr2:37640600-37642600	Enhancers	Fetal Stomach	stomach
12	chr2:37640600-37643000	Enhancers	Stomach Smooth Muscle	stomach
13	chr2:37640800-37641800	Enhancers	Fetal Brain Male	brain
14	chr2:37640800-37642600	Enhancers	Colon Smooth Muscle	Colon
15	chr2:37641000-37642000	Weak transcription	A549	lung
16	chr2:37641400-37642400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr2:37641400-37642400	Enhancers	Fetal Muscle Leg	muscle
18	chr2:37641400-37643200	Enhancers	Muscle Satellite Cultured Cells	--
19	chr2:37641600-37641800	Enhancers	K562	blood
20	chr2:37641600-37641800	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr2:37641600-37642200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr2:37641600-37642200	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr2:37641600-37642200	Enhancers	Fetal Lung	lung
24	chr2:37641600-37642400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr2:37641600-37642400	Enhancers	NHLF	lung
26	chr2:37641600-37642800	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr2:37641600-37642800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr2:37641600-37642800	Enhancers	Fetal Thymus	thymus
29	chr2:37641600-37643200	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr2:37641600-37643200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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