Variant report

Variant	rs870804
Chromosome Location	chr2:37614548-37614549
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10173794	0.89[ASN][1000 genomes]
rs10490445	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11886889	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12615162	0.86[EUR][1000 genomes]
rs12617664	0.80[ASN][1000 genomes]
rs17020706	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2041841	0.81[ASN][1000 genomes]
rs2058717	0.81[ASN][1000 genomes]
rs4510203	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4670198	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4670703	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4670704	0.89[ASN][1000 genomes]
rs4670708	0.82[ASN][1000 genomes]
rs56107750	0.80[ASN][1000 genomes]
rs58027408	0.85[ASN][1000 genomes]
rs58864283	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72792862	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72792863	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72792867	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7564835	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7567553	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs870803	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430724	chr2:37546820-37628704	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37604600-37616800	Weak transcription	Adipose Nuclei	Adipose
2	chr2:37607400-37618200	Weak transcription	Right Atrium	heart
3	chr2:37607600-37614600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr2:37609200-37615200	Weak transcription	Primary B cells from peripheral blood	blood
5	chr2:37609200-37616600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr2:37609200-37616800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr2:37611400-37615600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr2:37611800-37616800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr2:37612200-37616600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr2:37613600-37618400	Enhancers	NHDF-Ad	bronchial
11	chr2:37613800-37617200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr2:37614000-37617400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr2:37614200-37614800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr2:37614200-37615200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr2:37614200-37615200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr2:37614200-37615600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr2:37614200-37615600	Enhancers	HSMM	muscle
18	chr2:37614200-37615600	Enhancers	NH-A	brain
19	chr2:37614200-37615800	Enhancers	Muscle Satellite Cultured Cells	--
20	chr2:37614200-37617200	Enhancers	NHEK	skin
21	chr2:37614200-37617400	Enhancers	NHLF	lung
22	chr2:37614200-37618400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr2:37614200-37618600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr2:37614200-37618600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr2:37614400-37614600	Enhancers	Fetal Muscle Leg	muscle
26	chr2:37614400-37614600	Flanking Active TSS	HSMMtube	muscle
27	chr2:37614400-37614800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr2:37614400-37614800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr2:37614400-37615000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr2:37614400-37615000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr2:37614400-37615200	Flanking Active TSS	Osteobl	bone
32	chr2:37614400-37615400	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr2:37614400-37615600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr2:37614400-37615600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr2:37614400-37618400	Enhancers	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links