Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10490445	0.91[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs11886889	0.80[ASN][1000 genomes]
rs12617664	0.87[ASN][1000 genomes]
rs12620578	0.85[ASN][1000 genomes]
rs17020706	0.89[ASN][1000 genomes]
rs2041841	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2058717	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4670198	0.89[ASN][1000 genomes]
rs4670703	0.88[ASN][1000 genomes]
rs4670704	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4670708	0.89[ASN][1000 genomes]
rs56107750	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58027408	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58864283	0.83[ASN][1000 genomes]
rs59560107	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72792867	0.90[ASN][1000 genomes]
rs7564835	0.87[ASN][1000 genomes]
rs7567553	0.89[ASN][1000 genomes]
rs7587134	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs870803	0.89[ASN][1000 genomes]
rs870804	0.89[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10173794	PRKD3	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37623400-37629400	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr2:37625600-37641800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr2:37628200-37629600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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