Variant report

Variant	rs59580061
Chromosome Location	chr15:34660299-34660300
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MTA3	chr15:34659736-34660627	GM12878	blood:	n/a	n/a
2	CHD1	chr15:34659519-34660784	GM12878	blood:	n/a	n/a
3	MAX	chr15:34659398-34660320	ECC-1	luminal epithelium:	n/a	chr15:34660057-34660073 chr15:34660055-34660065
4	MAZ	chr15:34658243-34660583	IMR90	lung:	n/a	chr15:34660057-34660073 chr15:34659339-34659349 chr15:34659039-34659048 chr15:34659041-34659050 chr15:34659042-34659049 chr15:34658698-34658708 chr15:34659037-34659052
5	POLR2A	chr15:34659432-34660549	GM12878	blood:	n/a	n/a
6	SIN3AK20	chr15:34659233-34660409	MCF-7	breast:	n/a	n/a
7	YY1	chr15:34659255-34660527	GM12878	blood:	n/a	chr15:34659810-34659819
8	POLR2A	chr15:34659162-34660596	GM12892	blood:	n/a	n/a
9	YY1	chr15:34660269-34660623	GM12892	blood:	n/a	n/a
10	CTCF	chr15:34660208-34660301	GM10266	blood:	n/a	n/a
11	MYC	chr15:34658464-34660372	K562	blood:	n/a	chr15:34660057-34660073 chr15:34659339-34659349 chr15:34659039-34659048 chr15:34659041-34659050 chr15:34659042-34659049 chr15:34658698-34658708 chr15:34660055-34660065 chr15:34659037-34659052
12	RELA	chr15:34659406-34660438	GM15510	blood:	n/a	n/a
13	MAX	chr15:34658291-34660478	A549	lung:	n/a	chr15:34660057-34660073 chr15:34659339-34659349 chr15:34659039-34659048 chr15:34659041-34659050 chr15:34659042-34659049 chr15:34658698-34658708 chr15:34660055-34660065 chr15:34659037-34659052
14	MYC	chr15:34658474-34660480	NB4	blood:	n/a	chr15:34660057-34660073 chr15:34659339-34659349 chr15:34659039-34659048 chr15:34659041-34659050 chr15:34659042-34659049 chr15:34658698-34658708 chr15:34660055-34660065 chr15:34659037-34659052
15	SMC3	chr15:34659568-34660528	GM12878	blood:	n/a	chr15:34659924-34659938
16	MAX	chr15:34658183-34660371	GM12878	blood:	n/a	chr15:34660057-34660073 chr15:34659339-34659349 chr15:34659039-34659048 chr15:34659041-34659050 chr15:34659042-34659049 chr15:34658698-34658708 chr15:34660055-34660065 chr15:34659037-34659052
17	POLR2A	chr15:34658975-34660598	H1-hESC	embryonic stem cell:	n/a	n/a
18	POLR2A	chr15:34659047-34660961	GM12892	blood:	n/a	n/a
19	POLR2A	chr15:34659085-34660304	Hela-S3	cervix:	n/a	n/a
20	RCOR1	chr15:34659418-34660352	HepG2	liver:	n/a	n/a
21	WRNIP1	chr15:34659557-34660424	GM12878	blood:	n/a	n/a
22	CTCF	chr15:34659213-34660466	SK-N-SH	brain:	n/a	chr15:34659923-34659939 chr15:34659917-34659938 chr15:34659922-34659940
23	CHD2	chr15:34658428-34660331	Hela-S3	cervix:	n/a	n/a
24	TBP	chr15:34659392-34660334	HepG2	liver:	n/a	n/a
25	MAX	chr15:34659244-34660337	K562	blood:	n/a	chr15:34660057-34660073 chr15:34659339-34659349 chr15:34660055-34660065
26	TBL1XR1	chr15:34659534-34660300	K562	blood:	n/a	n/a
27	E2F6	chr15:34659386-34660413	H1-hESC	embryonic stem cell:	n/a	chr15:34659505-34659515 chr15:34659849-34659858
28	CTCF	chr15:34659284-34660710	A549	lung:	n/a	chr15:34659923-34659939 chr15:34659917-34659938 chr15:34659922-34659940
29	MAX	chr15:34659272-34660308	H1-hESC	embryonic stem cell:	n/a	chr15:34660057-34660073 chr15:34659339-34659349 chr15:34660055-34660065
30	POLR2A	chr15:34659199-34660450	K562	blood:	n/a	n/a
31	MAX	chr15:34659325-34660341	H1-hESC	embryonic stem cell:	n/a	chr15:34660057-34660073 chr15:34659339-34659349 chr15:34660055-34660065
32	POLR2A	chr15:34659248-34660305	HL-60	blood:	n/a	n/a
33	CTCF	chr15:34659354-34660483	HCT-116	colon:	n/a	chr15:34659923-34659939 chr15:34659917-34659938 chr15:34659922-34659940
34	POLR2A	chr15:34659392-34660341	GM12891	blood:	n/a	n/a
35	REST	chr15:34657805-34660414	H1-neurons	neurons:	n/a	chr15:34659499-34659509 chr15:34658685-34658698 chr15:34658576-34658585 chr15:34659359-34659377 chr15:34658688-34658701
36	STAT5A	chr15:34659439-34660455	GM12878	blood:	n/a	chr15:34660367-34660378 chr15:34660092-34660104
37	MAX	chr15:34658490-34660313	Hela-S3	cervix:	n/a	chr15:34660057-34660073 chr15:34659339-34659349 chr15:34659039-34659048 chr15:34659041-34659050 chr15:34659042-34659049 chr15:34658698-34658708 chr15:34660055-34660065 chr15:34659037-34659052
38	CTCF	chr15:34660180-34660330	HMF	breast:	n/a	n/a
39	BCLAF1	chr15:34659342-34660312	GM12878	blood:	n/a	chr15:34659481-34659494
40	POLR2A	chr15:34659130-34660515	GM12878	blood:	n/a	n/a
41	EP300	chr15:34659605-34660430	GM12878	blood:	n/a	chr15:34660362-34660376 chr15:34660368-34660382
42	SIN3A	chr15:34658276-34660327	H1-hESC	embryonic stem cell:	n/a	chr15:34659664-34659675 chr15:34659474-34659487 chr15:34658685-34658696 chr15:34659332-34659345
43	ZNF263	chr15:34659455-34660320	HEK293-T-REx	kidney:	n/a	n/a
44	POLR2A	chr15:34659220-34660573	GM12892	blood:	n/a	n/a
45	EBF1	chr15:34659425-34660311	GM12878	blood:	n/a	chr15:34660064-34660075
46	MXI1	chr15:34657575-34660618	IMR90	lung:	n/a	chr15:34659768-34659777
47	NFIC	chr15:34659432-34660405	GM12878	blood:	n/a	n/a
48	POLR2A	chr15:34659451-34660459	GM12892	blood:	n/a	n/a
49	POLR2A	chr15:34658545-34660317	GM15510	blood:	n/a	n/a
50	PML	chr15:34659273-34660514	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:34659566..34660339-chr15:34879136..34879733,2	MCF-7	breast:
2	chr15:34654804..34656714-chr15:34658910..34661703,3	K562	blood:
3	chr15:34393027..34394938-chr15:34659377..34661190,2	K562	blood:
4	chr15:34393027..34397233-chr15:34658612..34660877,5	K562	blood:
5	chr15:34632008..34636763-chr15:34655757..34660926,8	K562	blood:
6	chr15:34635280..34637526-chr15:34658001..34660457,2	K562	blood:
7	chr15:34659866..34661509-chr15:34661998..34663782,2	K562	blood:
8	chr15:34515223..34518649-chr15:34658701..34662221,4	K562	blood:
9	chr15:34659441..34662117-chr15:34875107..34877933,3	K562	blood:
10	chr15:34635005..34635906-chr15:34659046..34660693,6	K562	blood:
11	chr15:34658082..34661057-chr15:34874863..34877414,3	MCF-7	breast:
12	chr15:34634571..34635945-chr15:34658808..34660439,12	MCF-7	breast:
13	chr15:34633689..34636672-chr15:34659379..34661265,2	MCF-7	breast:
14	chr15:34515761..34518007-chr15:34659442..34662221,3	K562	blood:
15	chr15:34655711..34662054-chr15:34662110..34667087,9	K562	blood:
16	chr15:34519148..34521644-chr15:34659451..34661317,2	K562	blood:
17	chr15:34500928..34503711-chr15:34659510..34661352,2	MCF-7	breast:
18	chr15:34635038..34635903-chr15:34659506..34660374,4	MCF-7	breast:
19	chr15:34500871..34503422-chr15:34659158..34662481,4	K562	blood:
20	chr15:34659352..34660347-chr5:41870135..41870861,2	Hela-S3	cervix:

Variant related genes	Relation type
LPCAT4	TF binding region
ENSG00000248668	Chromatin interaction
ENSG00000134152	Chromatin interaction
ENSG00000128463	Chromatin interaction
ENSG00000182117	Chromatin interaction
ENSG00000266205	Chromatin interaction
ENSG00000215252	Chromatin interaction
ENSG00000182405	Chromatin interaction
ENSG00000184507	Chromatin interaction
ENSG00000134153	Chromatin interaction
ENSG00000176454	Chromatin interaction
ENSG00000259904	Chromatin interaction
ENSG00000083720	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs57733993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59247158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59383155	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61075561	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61114468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61690011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:44 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052804	chr15:34498529-34841447	Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv542341	chr15:34498529-34841447	Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv1798578	chr15:34543021-34988247	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	esv1804312	chr15:34543021-34988247	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	esv1821622	chr15:34543021-34988247	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
6	esv1850950	chr15:34543021-34988247	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
7	esv2758376	chr15:34543021-34988247	Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
8	esv2760024	chr15:34543021-34988247	Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
9	nsv428303	chr15:34543021-34988247	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
10	nsv1036475	chr15:34552879-34841587	Bivalent/Poised TSS Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
11	nsv542342	chr15:34552879-34841587	Active TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
12	nsv1048550	chr15:34553078-34841447	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
13	nsv542343	chr15:34553078-34841447	Active TSS Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
14	nsv471682	chr15:34560451-34882630	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
15	nsv469547	chr15:34594557-34757807	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
16	nsv482528	chr15:34594557-34757807	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
17	esv1817014	chr15:34598601-34911177	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
18	esv1817924	chr15:34598601-34911177	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
19	esv1847172	chr15:34598601-34911177	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
20	esv1802396	chr15:34598601-34988247	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
21	esv1809360	chr15:34598601-34988247	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Weak transcription Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
22	esv1844776	chr15:34598601-34988247	Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
23	nsv427957	chr15:34598601-34988247	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
24	nsv1039577	chr15:34624178-34962093	Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
25	nsv542344	chr15:34624178-34962093	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
26	nsv542345	chr15:34626815-34841586	Strong transcription Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
27	nsv542346	chr15:34627015-34841447	Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
28	nsv915918	chr15:34627109-34841422	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
29	nsv916680	chr15:34627109-34964198	Active TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
30	esv1822549	chr15:34628041-34909164	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
31	nsv1038524	chr15:34628041-34962093	Flanking Bivalent TSS/Enh Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
32	nsv542347	chr15:34628041-34962093	Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
33	nsv1042687	chr15:34635218-35000806	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
34	esv1843690	chr15:34641090-34909164	Weak transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
35	esv1802636	chr15:34641223-34880216	Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
36	esv1850192	chr15:34643735-34880216	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
37	nsv1485	chr15:34646207-34893740	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
38	nsv517751	chr15:34647568-34871296	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
39	nsv471236	chr15:34652683-34800594	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
40	esv1814737	chr15:34653046-34880216	Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
41	nsv984049	chr15:34657736-34700792	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	n/a
42	esv3402810	chr15:34658010-34660808	Flanking Active TSS Active TSS Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	n/a
43	nsv1050834	chr15:34658419-34855806	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
44	nsv827290	chr15:34659974-34877358	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34657600-34660600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr15:34657800-34660400	Active TSS	Gastric	stomach
3	chr15:34658000-34660400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr15:34658000-34660400	Active TSS	Right Ventricle	heart
5	chr15:34658000-34660600	Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr15:34658200-34660400	Active TSS	Left Ventricle	heart
7	chr15:34658200-34660600	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr15:34658200-34660800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:34658400-34660400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
10	chr15:34658400-34660400	Active TSS	H9 Cell Line	embryonic stem cell
11	chr15:34658400-34660400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr15:34658400-34660400	Active TSS	Fetal Intestine Small	intestine
13	chr15:34658400-34660400	Active TSS	Ovary	ovary
14	chr15:34658400-34660400	Active TSS	NHDF-Ad	bronchial
15	chr15:34658400-34660600	Active TSS	Fetal Intestine Large	intestine
16	chr15:34658400-34660600	Active TSS	Sigmoid Colon	Sigmoid Colon
17	chr15:34658400-34660800	Active TSS	ES-I3 Cell Line	embryonic stem cell
18	chr15:34658400-34660800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr15:34658400-34660800	Active TSS	NHLF	lung
20	chr15:34658600-34660400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr15:34658600-34660400	Active TSS	Primary T killer memory cells from peripheral blood	blood
22	chr15:34658600-34660400	Active TSS	Aorta	Aorta
23	chr15:34658600-34660400	Active TSS	Lung	lung
24	chr15:34658600-34660400	Active TSS	Psoas Muscle	Psoas
25	chr15:34658600-34660600	Active TSS	H1 Cell Line	embryonic stem cell
26	chr15:34658600-34660600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr15:34658600-34660600	Active TSS	Primary T helper cells PMA-I stimulated	--
28	chr15:34658600-34660600	Active TSS	Esophagus	oesophagus
29	chr15:34658600-34660800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr15:34658600-34660800	Active TSS	HSMM	muscle
31	chr15:34658600-34661000	Active TSS	Rectal Smooth Muscle	rectum
32	chr15:34658800-34660600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr15:34659600-34660400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
34	chr15:34659800-34660600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr15:34660000-34660400	Flanking Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr15:34660000-34660400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
37	chr15:34660000-34660400	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
38	chr15:34660000-34660400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
39	chr15:34660000-34660400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
40	chr15:34660000-34660400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
41	chr15:34660000-34660600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr15:34660000-34660600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr15:34660000-34660600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
44	chr15:34660000-34660600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr15:34660000-34660600	Flanking Active TSS	Primary B cells from peripheral blood	blood
46	chr15:34660000-34660600	Flanking Active TSS	Primary hematopoietic stem cells	blood
47	chr15:34660000-34660600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
48	chr15:34660000-34660600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
49	chr15:34660000-34660600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
50	chr15:34660000-34660600	Flanking Active TSS	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links