Variant report

Variant	rs59752873
Chromosome Location	chr18:43845377-43845378
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs56023140	1.00[EUR][1000 genomes]
rs59429424	1.00[EUR][1000 genomes]
rs60384600	1.00[EUR][1000 genomes]
rs73427114	1.00[EUR][1000 genomes]
rs73427133	1.00[EUR][1000 genomes]
rs73956216	1.00[EUR][1000 genomes]
rs73956217	1.00[EUR][1000 genomes]
rs73956219	1.00[EUR][1000 genomes]
rs73956264	1.00[EUR][1000 genomes]
rs73956269	1.00[EUR][1000 genomes]
rs73956270	1.00[EUR][1000 genomes]
rs73956272	1.00[EUR][1000 genomes]
rs73956273	1.00[EUR][1000 genomes]
rs73956280	1.00[EUR][1000 genomes]
rs73956281	1.00[EUR][1000 genomes]
rs73956284	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064031	chr18:43782309-43878806	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43826600-43847000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr18:43830000-43854200	Weak transcription	Esophagus	oesophagus
3	chr18:43830600-43847400	Weak transcription	Pancreas	Pancrea
4	chr18:43831000-43851400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr18:43831400-43848000	Weak transcription	Fetal Kidney	kidney
6	chr18:43831400-43863200	Weak transcription	Fetal Intestine Small	intestine
7	chr18:43833800-43856800	Weak transcription	Aorta	Aorta
8	chr18:43834800-43849000	Weak transcription	HUVEC	blood vessel
9	chr18:43839600-43845600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr18:43840000-43846000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr18:43840000-43846000	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr18:43840000-43853600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr18:43840600-43846400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr18:43840600-43850600	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr18:43840800-43846000	Weak transcription	A549	lung
16	chr18:43841000-43845600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr18:43841000-43846000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr18:43841000-43861400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr18:43841000-43864200	Weak transcription	Brain Cingulate Gyrus	brain
20	chr18:43841200-43845600	Genic enhancers	HSMM	muscle
21	chr18:43841200-43847400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr18:43841200-43847400	Strong transcription	Primary B cells from cord blood	blood
23	chr18:43841200-43849600	Strong transcription	Dnd41	blood
24	chr18:43841400-43845800	Weak transcription	Rectal Smooth Muscle	rectum
25	chr18:43841400-43858000	Weak transcription	HSMMtube	muscle
26	chr18:43841400-43858400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr18:43842000-43845400	Strong transcription	Fetal Thymus	thymus
28	chr18:43842000-43845600	Strong transcription	Fetal Intestine Large	intestine
29	chr18:43842000-43846000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr18:43842000-43848800	Strong transcription	Primary T cells fromperipheralblood	blood
31	chr18:43842200-43849200	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr18:43842200-43852000	Weak transcription	Colonic Mucosa	Colon
33	chr18:43842200-43869800	Weak transcription	Stomach Smooth Muscle	stomach
34	chr18:43842400-43846000	Strong transcription	Primary hematopoietic stem cells	blood
35	chr18:43842400-43846200	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr18:43842400-43846200	Strong transcription	Primary B cells from peripheral blood	blood
37	chr18:43842600-43845600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr18:43842600-43845600	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
39	chr18:43842600-43845600	Strong transcription	Liver	Liver
40	chr18:43842600-43845800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr18:43842600-43846000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr18:43842600-43846000	Strong transcription	Thymus	Thymus
43	chr18:43842600-43846600	Strong transcription	Duodenum Mucosa	Duodenum
44	chr18:43842800-43845600	Strong transcription	Ovary	ovary
45	chr18:43842800-43845600	Strong transcription	Rectal Mucosa Donor 31	rectum
46	chr18:43842800-43845600	Strong transcription	Small Intestine	intestine
47	chr18:43842800-43845600	Strong transcription	NHLF	lung
48	chr18:43842800-43846000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr18:43842800-43846000	Strong transcription	Fetal Lung	lung
50	chr18:43843000-43846000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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