Variant report

Variant	rs73956264
Chromosome Location	chr18:43796843-43796844
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:43793217..43797206-chr18:43801637..43804775,4	K562	blood:
2	chr18:43792929..43795113-chr18:43795135..43797949,3	K562	blood:
3	chr18:43795518..43797206-chr18:43801637..43804077,2	K562	blood:
4	chr18:43792629..43794429-chr18:43796211..43797949,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs55900453	0.94[AFR][1000 genomes]
rs56023140	1.00[EUR][1000 genomes]
rs56065400	0.82[AFR][1000 genomes]
rs56082923	0.94[AFR][1000 genomes]
rs56236809	0.88[AFR][1000 genomes]
rs57502921	0.88[AFR][1000 genomes]
rs57803441	0.83[AFR][1000 genomes]
rs58398659	0.88[AFR][1000 genomes]
rs59033182	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59182447	0.94[AFR][1000 genomes]
rs59429424	1.00[EUR][1000 genomes]
rs59752873	1.00[EUR][1000 genomes]
rs59910849	0.88[AFR][1000 genomes]
rs60114246	0.85[AFR][1000 genomes]
rs60384600	1.00[EUR][1000 genomes]
rs60921328	0.94[AFR][1000 genomes]
rs7240916	0.94[AFR][1000 genomes]
rs73427114	1.00[EUR][1000 genomes]
rs73427133	1.00[EUR][1000 genomes]
rs73956216	1.00[EUR][1000 genomes]
rs73956217	1.00[EUR][1000 genomes]
rs73956219	1.00[EUR][1000 genomes]
rs73956249	0.82[AFR][1000 genomes]
rs73956251	0.88[AFR][1000 genomes]
rs73956252	0.94[AFR][1000 genomes]
rs73956258	0.94[AFR][1000 genomes]
rs73956259	0.94[AFR][1000 genomes]
rs73956260	0.94[AFR][1000 genomes]
rs73956261	0.94[AFR][1000 genomes]
rs73956262	0.94[AFR][1000 genomes]
rs73956263	0.91[AFR][1000 genomes]
rs73956265	0.94[AFR][1000 genomes]
rs73956267	0.94[AFR][1000 genomes]
rs73956268	0.94[AFR][1000 genomes]
rs73956269	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956270	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956271	0.94[AFR][1000 genomes]
rs73956272	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73956273	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73956274	0.88[AFR][1000 genomes]
rs73956275	0.88[AFR][1000 genomes]
rs73956276	0.88[AFR][1000 genomes]
rs73956280	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73956281	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73956284	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73956287	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064031	chr18:43782309-43878806	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43763400-43799200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr18:43769200-43802800	Weak transcription	Brain Hippocampus Middle	brain
3	chr18:43776400-43802000	Weak transcription	Brain Germinal Matrix	brain
4	chr18:43777000-43812000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr18:43777800-43805000	Weak transcription	Fetal Intestine Small	intestine
6	chr18:43784600-43802200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr18:43791600-43799600	Weak transcription	Psoas Muscle	Psoas
8	chr18:43791600-43804200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr18:43791800-43798600	Weak transcription	K562	blood
10	chr18:43791800-43800000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr18:43792200-43814600	Weak transcription	Colon Smooth Muscle	Colon
12	chr18:43792600-43799800	Weak transcription	NHLF	lung
13	chr18:43792800-43799600	Weak transcription	NHDF-Ad	bronchial
14	chr18:43794400-43800200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr18:43794400-43801600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr18:43794600-43801600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr18:43794800-43797400	Weak transcription	Colonic Mucosa	Colon
18	chr18:43794800-43797800	Weak transcription	Stomach Mucosa	stomach
19	chr18:43794800-43802400	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr18:43794800-43802600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr18:43794800-43815000	Weak transcription	Rectal Smooth Muscle	rectum
22	chr18:43795000-43799000	Weak transcription	Fetal Kidney	kidney
23	chr18:43795600-43800400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr18:43795600-43800400	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr18:43795800-43797000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr18:43795800-43797000	Strong transcription	Brain Anterior Caudate	brain
27	chr18:43795800-43797000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr18:43795800-43797000	Strong transcription	Fetal Brain Female	brain
29	chr18:43795800-43797000	Strong transcription	Fetal Intestine Large	intestine
30	chr18:43795800-43797000	Strong transcription	Fetal Muscle Trunk	muscle
31	chr18:43795800-43797000	Strong transcription	Placenta	Placenta
32	chr18:43795800-43797000	Strong transcription	Fetal Thymus	thymus
33	chr18:43795800-43797000	Strong transcription	Ovary	ovary
34	chr18:43795800-43797000	Strong transcription	Thymus	Thymus
35	chr18:43795800-43797200	Strong transcription	Hela-S3	cervix
36	chr18:43795800-43797400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr18:43795800-43797400	Strong transcription	Adipose Nuclei	Adipose
38	chr18:43795800-43797400	Strong transcription	Duodenum Smooth Muscle	Duodenum
39	chr18:43795800-43797400	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr18:43795800-43797400	Strong transcription	HepG2	liver
41	chr18:43795800-43797400	Strong transcription	HMEC	breast
42	chr18:43795800-43798600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr18:43795800-43798800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr18:43795800-43798800	Strong transcription	Primary T cells fromperipheralblood	blood
45	chr18:43795800-43799000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr18:43795800-43799000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr18:43795800-43799000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr18:43795800-43799000	Strong transcription	Rectal Mucosa Donor 31	rectum
49	chr18:43795800-43799200	Strong transcription	HUES6 Cell Line	embryonic stem cell
50	chr18:43795800-43799200	Strong transcription	HUES64 Cell Line	embryonic stem cell

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