Variant report

Variant	rs73427114
Chromosome Location	chr18:43848723-43848724
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:43840075..43842434-chr18:43846486..43849095,2	K562	blood:
2	chr18:43848661..43851599-chr18:43856427..43859027,2	K562	blood:
3	chr18:43847366..43849073-chr18:43852796..43854373,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs56023140	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56656421	0.90[AFR][1000 genomes]
rs59429424	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59752873	1.00[EUR][1000 genomes]
rs60384600	1.00[EUR][1000 genomes]
rs73425190	0.90[AFR][1000 genomes]
rs73427133	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956216	1.00[EUR][1000 genomes]
rs73956217	1.00[EUR][1000 genomes]
rs73956219	1.00[EUR][1000 genomes]
rs73956264	1.00[EUR][1000 genomes]
rs73956269	1.00[EUR][1000 genomes]
rs73956270	1.00[EUR][1000 genomes]
rs73956272	1.00[EUR][1000 genomes]
rs73956273	1.00[EUR][1000 genomes]
rs73956280	1.00[EUR][1000 genomes]
rs73956281	1.00[EUR][1000 genomes]
rs73956284	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064031	chr18:43782309-43878806	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43830000-43854200	Weak transcription	Esophagus	oesophagus
2	chr18:43831000-43851400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr18:43831400-43863200	Weak transcription	Fetal Intestine Small	intestine
4	chr18:43833800-43856800	Weak transcription	Aorta	Aorta
5	chr18:43834800-43849000	Weak transcription	HUVEC	blood vessel
6	chr18:43840000-43853600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr18:43840600-43850600	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr18:43841000-43861400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr18:43841000-43864200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr18:43841200-43849600	Strong transcription	Dnd41	blood
11	chr18:43841400-43858000	Weak transcription	HSMMtube	muscle
12	chr18:43841400-43858400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr18:43842000-43848800	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr18:43842200-43849200	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr18:43842200-43852000	Weak transcription	Colonic Mucosa	Colon
16	chr18:43842200-43869800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr18:43843200-43850600	Weak transcription	Brain Substantia Nigra	brain
18	chr18:43843200-43852200	Weak transcription	Gastric	stomach
19	chr18:43843200-43855200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr18:43843600-43858200	Weak transcription	K562	blood
21	chr18:43844000-43857600	Weak transcription	Fetal Muscle Trunk	muscle
22	chr18:43844200-43849600	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr18:43844200-43857000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr18:43844200-43861400	Weak transcription	Hela-S3	cervix
25	chr18:43844400-43856400	Weak transcription	NHDF-Ad	bronchial
26	chr18:43844400-43857800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr18:43844600-43848800	Strong transcription	Primary T helper cells PMA-I stimulated	--
28	chr18:43844600-43849000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr18:43844600-43851800	Weak transcription	Right Atrium	heart
30	chr18:43844600-43854000	Weak transcription	GM12878-XiMat	blood
31	chr18:43844600-43857800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr18:43844600-43857800	Weak transcription	Adipose Nuclei	Adipose
33	chr18:43844600-43858400	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr18:43844800-43849000	Weak transcription	Left Ventricle	heart
35	chr18:43844800-43849800	Weak transcription	Osteobl	bone
36	chr18:43844800-43851800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr18:43844800-43853600	Weak transcription	Placenta	Placenta
38	chr18:43844800-43857000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr18:43844800-43857600	Weak transcription	NH-A	brain
40	chr18:43845000-43853600	Weak transcription	HMEC	breast
41	chr18:43845000-43856800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr18:43845000-43861400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr18:43845200-43853200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr18:43845400-43856200	Weak transcription	Fetal Thymus	thymus
45	chr18:43845600-43850200	Weak transcription	Ovary	ovary
46	chr18:43845600-43850600	Weak transcription	Fetal Intestine Large	intestine
47	chr18:43845600-43853000	Weak transcription	Small Intestine	intestine
48	chr18:43845600-43853600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr18:43845600-43856400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr18:43845600-43857000	Weak transcription	NHLF	lung

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