Variant report

Variant	rs73956281
Chromosome Location	chr18:43837692-43837693
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs55900453	0.94[AFR][1000 genomes]
rs56023140	1.00[EUR][1000 genomes]
rs56065400	0.82[AFR][1000 genomes]
rs56082923	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56236809	0.88[AFR][1000 genomes]
rs57502921	0.88[AFR][1000 genomes]
rs57803441	0.82[AFR][1000 genomes]
rs58398659	0.88[AFR][1000 genomes]
rs59033182	0.94[AFR][1000 genomes]
rs59182447	0.94[AFR][1000 genomes]
rs59429424	1.00[EUR][1000 genomes]
rs59752873	1.00[EUR][1000 genomes]
rs59910849	0.88[AFR][1000 genomes]
rs60114246	0.85[AFR][1000 genomes]
rs60384600	1.00[EUR][1000 genomes]
rs60921328	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7240916	0.94[AFR][1000 genomes]
rs73427114	1.00[EUR][1000 genomes]
rs73427133	1.00[EUR][1000 genomes]
rs73956216	1.00[EUR][1000 genomes]
rs73956217	1.00[EUR][1000 genomes]
rs73956219	1.00[EUR][1000 genomes]
rs73956249	0.82[AFR][1000 genomes]
rs73956251	0.88[AFR][1000 genomes]
rs73956252	0.94[AFR][1000 genomes]
rs73956258	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73956259	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73956260	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73956261	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73956262	0.94[AFR][1000 genomes]
rs73956263	0.91[AFR][1000 genomes]
rs73956264	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73956265	0.94[AFR][1000 genomes]
rs73956267	0.94[AFR][1000 genomes]
rs73956268	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73956269	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73956270	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73956271	0.94[AFR][1000 genomes]
rs73956272	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73956273	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956274	1.00[AFR][1000 genomes]
rs73956275	1.00[AFR][1000 genomes]
rs73956276	1.00[AFR][1000 genomes]
rs73956280	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73956284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956287	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064031	chr18:43782309-43878806	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	esv3433739	chr18:43837569-43837939	Weak transcription Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43825400-43844200	Weak transcription	Fetal Brain Female	brain
2	chr18:43826200-43840000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr18:43826600-43847000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr18:43826800-43843600	Weak transcription	Brain Germinal Matrix	brain
5	chr18:43828200-43839600	Weak transcription	Right Atrium	heart
6	chr18:43828400-43839600	Weak transcription	Fetal Stomach	stomach
7	chr18:43829200-43840400	Weak transcription	K562	blood
8	chr18:43829200-43842800	Weak transcription	Fetal Muscle Leg	muscle
9	chr18:43830000-43839400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr18:43830000-43854200	Weak transcription	Esophagus	oesophagus
11	chr18:43830400-43839600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr18:43830400-43842800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr18:43830600-43847400	Weak transcription	Pancreas	Pancrea
14	chr18:43830800-43839800	Weak transcription	Fetal Heart	heart
15	chr18:43830800-43842600	Weak transcription	Gastric	stomach
16	chr18:43831000-43839600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr18:43831000-43839600	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr18:43831000-43839600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr18:43831000-43839800	Weak transcription	HSMMtube	muscle
20	chr18:43831000-43840000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr18:43831000-43840200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr18:43831000-43840200	Weak transcription	Brain Angular Gyrus	brain
23	chr18:43831000-43842800	Weak transcription	Small Intestine	intestine
24	chr18:43831000-43844600	Weak transcription	Spleen	Spleen
25	chr18:43831000-43851400	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr18:43831200-43839400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr18:43831200-43840200	Weak transcription	Stomach Mucosa	stomach
28	chr18:43831200-43842800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr18:43831200-43843000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr18:43831400-43837800	Weak transcription	Thymus	Thymus
31	chr18:43831400-43839400	Weak transcription	Psoas Muscle	Psoas
32	chr18:43831400-43840200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr18:43831400-43840400	Weak transcription	Primary hematopoietic stem cells	blood
34	chr18:43831400-43841000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr18:43831400-43842000	Weak transcription	Fetal Intestine Large	intestine
36	chr18:43831400-43842600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr18:43831400-43842600	Weak transcription	Duodenum Mucosa	Duodenum
38	chr18:43831400-43842800	Weak transcription	Brain Substantia Nigra	brain
39	chr18:43831400-43842800	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr18:43831400-43848000	Weak transcription	Fetal Kidney	kidney
41	chr18:43831400-43863200	Weak transcription	Fetal Intestine Small	intestine
42	chr18:43831600-43838200	Weak transcription	GM12878-XiMat	blood
43	chr18:43831600-43840200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr18:43831600-43842600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr18:43831600-43842600	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr18:43831600-43842800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr18:43831600-43842800	Weak transcription	Hela-S3	cervix
48	chr18:43832600-43839400	Weak transcription	Placenta	Placenta
49	chr18:43832800-43838400	Strong transcription	Primary B cells from peripheral blood	blood
50	chr18:43833000-43837800	Strong transcription	Monocytes-CD14+_RO01746	blood

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