Variant report

Variant	rs73956258
Chromosome Location	chr18:43791101-43791102
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:43778384..43781294-chr18:43789477..43791709,2	MCF-7	breast:
2	chr18:43762949..43765600-chr18:43790689..43792500,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs55759370	0.82[AFR][1000 genomes]
rs55880870	0.82[AFR][1000 genomes]
rs55900453	1.00[AFR][1000 genomes]
rs56044366	0.82[AFR][1000 genomes]
rs56065400	0.88[AFR][1000 genomes]
rs56082923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56236809	0.94[AFR][1000 genomes]
rs56912043	0.82[AFR][1000 genomes]
rs57502921	0.94[AFR][1000 genomes]
rs57693291	0.82[AFR][1000 genomes]
rs57803441	0.88[AFR][1000 genomes]
rs58398659	0.94[AFR][1000 genomes]
rs58899840	0.82[AFR][1000 genomes]
rs58961089	0.82[AFR][1000 genomes]
rs59033182	1.00[AFR][1000 genomes]
rs59182447	1.00[AFR][1000 genomes]
rs59910849	0.94[AFR][1000 genomes]
rs60100844	0.82[AFR][1000 genomes]
rs60114246	0.91[AFR][1000 genomes]
rs60336955	0.82[AFR][1000 genomes]
rs60921328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7240916	1.00[AFR][1000 genomes]
rs73956231	0.82[AFR][1000 genomes]
rs73956234	0.82[AFR][1000 genomes]
rs73956249	0.88[AFR][1000 genomes]
rs73956251	0.94[AFR][1000 genomes]
rs73956252	1.00[AFR][1000 genomes]
rs73956259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956262	1.00[AFR][1000 genomes]
rs73956263	0.97[AFR][1000 genomes]
rs73956264	0.94[AFR][1000 genomes]
rs73956265	1.00[AFR][1000 genomes]
rs73956267	1.00[AFR][1000 genomes]
rs73956268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956269	1.00[AFR][1000 genomes]
rs73956270	1.00[AFR][1000 genomes]
rs73956271	1.00[AFR][1000 genomes]
rs73956272	1.00[AFR][1000 genomes]
rs73956273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73956274	0.94[AFR][1000 genomes]
rs73956275	0.94[AFR][1000 genomes]
rs73956276	0.94[AFR][1000 genomes]
rs73956280	0.88[AFR][1000 genomes]
rs73956281	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73956284	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73956287	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8096742	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064031	chr18:43782309-43878806	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43755600-43795600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr18:43756800-43796000	Weak transcription	Esophagus	oesophagus
3	chr18:43761200-43796000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr18:43763000-43795800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr18:43763400-43799200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr18:43763600-43796000	Weak transcription	Fetal Lung	lung
7	chr18:43764600-43795800	Weak transcription	Lung	lung
8	chr18:43769200-43802800	Weak transcription	Brain Hippocampus Middle	brain
9	chr18:43770800-43796000	Weak transcription	Brain Substantia Nigra	brain
10	chr18:43771800-43795800	Weak transcription	Brain Anterior Caudate	brain
11	chr18:43772000-43795800	Weak transcription	Adipose Nuclei	Adipose
12	chr18:43772000-43795800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr18:43772200-43796000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr18:43772800-43795800	Weak transcription	Fetal Muscle Trunk	muscle
15	chr18:43774400-43795800	Weak transcription	Fetal Stomach	stomach
16	chr18:43776400-43802000	Weak transcription	Brain Germinal Matrix	brain
17	chr18:43776800-43795800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr18:43777000-43812000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr18:43777200-43791600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr18:43777200-43795600	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr18:43777800-43795800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr18:43777800-43805000	Weak transcription	Fetal Intestine Small	intestine
23	chr18:43780000-43791400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr18:43780000-43791400	Weak transcription	Osteobl	bone
25	chr18:43780000-43793200	Weak transcription	Liver	Liver
26	chr18:43780000-43795800	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr18:43780200-43793200	Weak transcription	Fetal Heart	heart
28	chr18:43780400-43791400	Weak transcription	K562	blood
29	chr18:43781200-43791400	Weak transcription	Hela-S3	cervix
30	chr18:43781400-43795200	Enhancers	Primary T helper cells PMA-I stimulated	--
31	chr18:43783400-43793200	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr18:43783600-43796000	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr18:43784600-43795800	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr18:43784600-43802200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr18:43784800-43791200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr18:43784800-43795800	Weak transcription	HSMMtube	muscle
37	chr18:43784800-43796000	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr18:43784800-43796000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr18:43784800-43796000	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr18:43785000-43791200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr18:43785200-43796000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr18:43785400-43791200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr18:43785400-43795800	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr18:43785400-43795800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr18:43785400-43796000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr18:43786000-43791200	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr18:43786000-43791200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr18:43786000-43791200	Weak transcription	Thymus	Thymus
49	chr18:43786000-43791200	Weak transcription	HUVEC	blood vessel
50	chr18:43786000-43791200	Weak transcription	Monocytes-CD14+_RO01746	blood

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