Variant report

Variant	rs58961089
Chromosome Location	chr18:43756474-43756475
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:43754165..43756653-chr18:43758576..43760814,2	MCF-7	breast:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs55740138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55759370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55767951	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55880870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55900453	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56044366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56065400	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56082923	0.82[AFR][1000 genomes]
rs56656421	1.00[EUR][1000 genomes]
rs56912043	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57502921	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57693291	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57803441	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58398659	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58725857	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58899840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59033182	0.82[AFR][1000 genomes]
rs59182447	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59910849	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60077572	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60100844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60114246	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60336955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60781524	1.00[AMR][1000 genomes]
rs60921328	0.82[AFR][1000 genomes]
rs61201240	0.94[AFR][1000 genomes]
rs7226417	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7235500	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7237569	1.00[EUR][1000 genomes]
rs7239657	1.00[EUR][1000 genomes]
rs7240916	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7241791	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73425190	1.00[EUR][1000 genomes]
rs73956204	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956207	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956217	0.91[AFR][1000 genomes]
rs73956218	0.84[AFR][1000 genomes]
rs73956219	0.91[AFR][1000 genomes]
rs73956220	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956221	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956222	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956223	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956233	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956249	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956251	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956252	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956258	0.82[AFR][1000 genomes]
rs73956259	0.82[AFR][1000 genomes]
rs73956260	0.82[AFR][1000 genomes]
rs73956261	0.82[AFR][1000 genomes]
rs73956262	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956263	1.00[EUR][1000 genomes]
rs73956265	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956267	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956268	0.82[AFR][1000 genomes]
rs73956269	0.82[AFR][1000 genomes]
rs73956270	0.82[AFR][1000 genomes]
rs73956271	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956272	0.82[AFR][1000 genomes]
rs73956273	0.82[AFR][1000 genomes]
rs73956274	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956275	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956276	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956280	1.00[AMR][1000 genomes]
rs73956287	1.00[EUR][1000 genomes]
rs8083843	1.00[EUR][1000 genomes]
rs8088778	1.00[EUR][1000 genomes]
rs8096742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43755000-43758600	Weak transcription	Lung	lung
2	chr18:43755000-43758800	Enhancers	Primary B cells from peripheral blood	blood
3	chr18:43755000-43761600	Weak transcription	Pancreas	Pancrea
4	chr18:43755000-43766800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr18:43755000-43769600	Weak transcription	Gastric	stomach
6	chr18:43755200-43756600	Flanking Active TSS	Dnd41	blood
7	chr18:43755200-43780400	Weak transcription	Aorta	Aorta
8	chr18:43755400-43756600	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr18:43755400-43756800	Enhancers	Fetal Thymus	thymus
10	chr18:43755400-43757000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr18:43755400-43757000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr18:43755400-43757400	Enhancers	Small Intestine	intestine
13	chr18:43755600-43756600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr18:43755600-43756600	Enhancers	Liver	Liver
15	chr18:43755600-43756600	Enhancers	Brain Hippocampus Middle	brain
16	chr18:43755600-43756600	Enhancers	HepG2	liver
17	chr18:43755600-43756600	Weak transcription	Osteobl	bone
18	chr18:43755600-43756800	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr18:43755600-43757600	Weak transcription	Right Ventricle	heart
20	chr18:43755600-43757800	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr18:43755600-43758600	Enhancers	Left Ventricle	heart
22	chr18:43755600-43761600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr18:43755600-43761600	Weak transcription	Ovary	ovary
24	chr18:43755600-43762000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr18:43755600-43762600	Enhancers	Primary T cells fromperipheralblood	blood
26	chr18:43755600-43762600	Weak transcription	Stomach Smooth Muscle	stomach
27	chr18:43755600-43763000	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr18:43755600-43764600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr18:43755600-43766800	Weak transcription	Fetal Intestine Small	intestine
30	chr18:43755600-43768000	Weak transcription	Fetal Intestine Large	intestine
31	chr18:43755600-43776200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr18:43755600-43795600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr18:43755800-43756600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr18:43755800-43756600	Enhancers	Brain Inferior Temporal Lobe	brain
35	chr18:43755800-43756600	Enhancers	Duodenum Mucosa	Duodenum
36	chr18:43755800-43756800	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr18:43755800-43757800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr18:43755800-43757800	Weak transcription	Fetal Stomach	stomach
39	chr18:43755800-43757800	Weak transcription	Spleen	Spleen
40	chr18:43755800-43758800	Enhancers	Psoas Muscle	Psoas
41	chr18:43755800-43759800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr18:43755800-43761800	Weak transcription	Rectal Smooth Muscle	rectum
43	chr18:43755800-43762400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr18:43755800-43762600	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr18:43755800-43765800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
46	chr18:43755800-43766000	Enhancers	Primary T helper cells fromperipheralblood	blood
47	chr18:43755800-43776800	Weak transcription	Fetal Muscle Leg	muscle
48	chr18:43755800-43779600	Weak transcription	Thymus	Thymus
49	chr18:43756000-43756600	Enhancers	Primary neutrophils fromperipheralblood	blood
50	chr18:43756000-43756600	Enhancers	Primary B cells from cord blood	blood

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