Variant report

Variant	rs73956234
Chromosome Location	chr18:43755848-43755849
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:43754165..43756653-chr18:43758576..43760814,2	MCF-7	breast:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs55740138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55759370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55767951	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55880870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55900453	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56044366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56065400	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56082923	0.82[AFR][1000 genomes]
rs56656421	1.00[EUR][1000 genomes]
rs56912043	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57502921	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57693291	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57803441	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58398659	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58725857	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58899840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58961089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59033182	0.82[AFR][1000 genomes]
rs59182447	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59910849	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60077572	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60100844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60114246	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60336955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60781524	1.00[AMR][1000 genomes]
rs60921328	0.82[AFR][1000 genomes]
rs61201240	0.94[AFR][1000 genomes]
rs7226417	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7235500	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7237569	1.00[EUR][1000 genomes]
rs7239657	1.00[EUR][1000 genomes]
rs7240916	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7241791	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73425190	1.00[EUR][1000 genomes]
rs73956204	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956207	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956217	0.91[AFR][1000 genomes]
rs73956218	0.84[AFR][1000 genomes]
rs73956219	0.91[AFR][1000 genomes]
rs73956220	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956221	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956222	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956223	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956233	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956249	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956251	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956252	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956258	0.82[AFR][1000 genomes]
rs73956259	0.82[AFR][1000 genomes]
rs73956260	0.82[AFR][1000 genomes]
rs73956261	0.82[AFR][1000 genomes]
rs73956262	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956263	1.00[EUR][1000 genomes]
rs73956265	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956267	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956268	0.82[AFR][1000 genomes]
rs73956269	0.82[AFR][1000 genomes]
rs73956270	0.82[AFR][1000 genomes]
rs73956271	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956272	0.82[AFR][1000 genomes]
rs73956273	0.82[AFR][1000 genomes]
rs73956274	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956275	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956276	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956280	1.00[AMR][1000 genomes]
rs73956287	1.00[EUR][1000 genomes]
rs8083843	1.00[EUR][1000 genomes]
rs8088778	1.00[EUR][1000 genomes]
rs8096742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43753200-43756000	Active TSS	HUES64 Cell Line	embryonic stem cell
2	chr18:43753200-43756200	Active TSS	Right Atrium	heart
3	chr18:43754400-43756000	Flanking Active TSS	Primary B cells from cord blood	blood
4	chr18:43754800-43756000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr18:43755000-43756000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr18:43755000-43756400	Weak transcription	Esophagus	oesophagus
7	chr18:43755000-43758600	Weak transcription	Lung	lung
8	chr18:43755000-43758800	Enhancers	Primary B cells from peripheral blood	blood
9	chr18:43755000-43761600	Weak transcription	Pancreas	Pancrea
10	chr18:43755000-43766800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr18:43755000-43769600	Weak transcription	Gastric	stomach
12	chr18:43755200-43756000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr18:43755200-43756000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
14	chr18:43755200-43756000	Flanking Active TSS	Primary hematopoietic stem cells	blood
15	chr18:43755200-43756000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
16	chr18:43755200-43756000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
17	chr18:43755200-43756000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr18:43755200-43756000	Flanking Active TSS	Adipose Nuclei	Adipose
19	chr18:43755200-43756000	Flanking Active TSS	Hela-S3	cervix
20	chr18:43755200-43756200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
21	chr18:43755200-43756200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
22	chr18:43755200-43756200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
23	chr18:43755200-43756200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr18:43755200-43756200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
25	chr18:43755200-43756200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr18:43755200-43756200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
27	chr18:43755200-43756400	Flanking Active TSS	Primary T cells from cord blood	blood
28	chr18:43755200-43756400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
29	chr18:43755200-43756400	Flanking Active TSS	NHEK	skin
30	chr18:43755200-43756600	Flanking Active TSS	Dnd41	blood
31	chr18:43755200-43780400	Weak transcription	Aorta	Aorta
32	chr18:43755400-43756000	Enhancers	Rectal Mucosa Donor 31	rectum
33	chr18:43755400-43756200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr18:43755400-43756200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
35	chr18:43755400-43756200	Enhancers	Fetal Lung	lung
36	chr18:43755400-43756400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
37	chr18:43755400-43756400	Enhancers	Brain Cingulate Gyrus	brain
38	chr18:43755400-43756400	Enhancers	Brain Substantia Nigra	brain
39	chr18:43755400-43756600	Enhancers	Primary monocytes fromperipheralblood	blood
40	chr18:43755400-43756800	Enhancers	Fetal Thymus	thymus
41	chr18:43755400-43757000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr18:43755400-43757000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
43	chr18:43755400-43757400	Enhancers	Small Intestine	intestine
44	chr18:43755600-43756000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr18:43755600-43756000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
46	chr18:43755600-43756000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr18:43755600-43756000	Enhancers	Fetal Brain Male	brain
48	chr18:43755600-43756000	Enhancers	NH-A	brain
49	chr18:43755600-43756200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr18:43755600-43756200	Enhancers	Muscle Satellite Cultured Cells	--

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