Variant report

Variant	rs55880870
Chromosome Location	chr18:43765371-43765372
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:43753162..43757343-chr18:43764539..43768120,4	K562	blood:
2	chr18:43762949..43765600-chr18:43790689..43792500,2	K562	blood:

Variant related genes	Relation type
ENSG00000152242	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs55740138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55759370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55767951	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55900453	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56044366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56065400	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56082923	0.82[AFR][1000 genomes]
rs56656421	1.00[EUR][1000 genomes]
rs56912043	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57502921	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57693291	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57803441	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58398659	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58725857	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58899840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58961089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59033182	0.82[AFR][1000 genomes]
rs59182447	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59910849	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60077572	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60100844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60114246	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60336955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60781524	1.00[AMR][1000 genomes]
rs60921328	0.82[AFR][1000 genomes]
rs61201240	0.94[AFR][1000 genomes]
rs7226417	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7235500	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7237569	1.00[EUR][1000 genomes]
rs7239657	1.00[EUR][1000 genomes]
rs7240916	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7241791	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73425190	1.00[EUR][1000 genomes]
rs73956204	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956207	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956217	0.91[AFR][1000 genomes]
rs73956218	0.84[AFR][1000 genomes]
rs73956219	0.91[AFR][1000 genomes]
rs73956220	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956221	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956222	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956223	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956233	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956249	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956251	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956252	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956258	0.82[AFR][1000 genomes]
rs73956259	0.82[AFR][1000 genomes]
rs73956260	0.82[AFR][1000 genomes]
rs73956261	0.82[AFR][1000 genomes]
rs73956262	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956263	1.00[EUR][1000 genomes]
rs73956265	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956267	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956268	0.82[AFR][1000 genomes]
rs73956269	0.82[AFR][1000 genomes]
rs73956270	0.82[AFR][1000 genomes]
rs73956271	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956272	0.82[AFR][1000 genomes]
rs73956273	0.82[AFR][1000 genomes]
rs73956274	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956275	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956276	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956280	1.00[AMR][1000 genomes]
rs73956287	1.00[EUR][1000 genomes]
rs8083843	1.00[EUR][1000 genomes]
rs8088778	1.00[EUR][1000 genomes]
rs8096742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv978710	chr18:43759964-43770866	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43755000-43766800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr18:43755000-43769600	Weak transcription	Gastric	stomach
3	chr18:43755200-43780400	Weak transcription	Aorta	Aorta
4	chr18:43755600-43766800	Weak transcription	Fetal Intestine Small	intestine
5	chr18:43755600-43768000	Weak transcription	Fetal Intestine Large	intestine
6	chr18:43755600-43776200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr18:43755600-43795600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr18:43755800-43765800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr18:43755800-43766000	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr18:43755800-43776800	Weak transcription	Fetal Muscle Leg	muscle
11	chr18:43755800-43779600	Weak transcription	Thymus	Thymus
12	chr18:43756000-43771000	Weak transcription	NHDF-Ad	bronchial
13	chr18:43756200-43765800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr18:43756400-43765600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr18:43756400-43766600	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr18:43756600-43765600	Weak transcription	HepG2	liver
17	chr18:43756600-43771600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr18:43756800-43796000	Weak transcription	Esophagus	oesophagus
19	chr18:43757600-43765600	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr18:43758000-43782200	Weak transcription	Right Ventricle	heart
21	chr18:43758400-43767000	Weak transcription	Fetal Stomach	stomach
22	chr18:43758800-43773000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr18:43758800-43775000	Weak transcription	Dnd41	blood
24	chr18:43758800-43785000	Weak transcription	Fetal Thymus	thymus
25	chr18:43759200-43766800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr18:43761200-43765600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr18:43761200-43796000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr18:43761800-43779800	Weak transcription	Ovary	ovary
29	chr18:43762400-43779000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr18:43762600-43765600	Flanking Active TSS	GM12878-XiMat	blood
31	chr18:43762600-43770600	Weak transcription	Right Atrium	heart
32	chr18:43762800-43779600	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr18:43763000-43765400	Weak transcription	Stomach Mucosa	stomach
34	chr18:43763000-43776800	Weak transcription	HSMM	muscle
35	chr18:43763000-43779400	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr18:43763000-43785000	Weak transcription	Small Intestine	intestine
37	chr18:43763000-43795800	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr18:43763200-43765800	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr18:43763200-43768400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr18:43763200-43771800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr18:43763200-43776600	Weak transcription	NH-A	brain
42	chr18:43763200-43776800	Weak transcription	Colon Smooth Muscle	Colon
43	chr18:43763400-43765800	Enhancers	Fetal Heart	heart
44	chr18:43763400-43766800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr18:43763400-43770800	Weak transcription	A549	lung
46	chr18:43763400-43780400	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr18:43763400-43784400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr18:43763400-43799200	Weak transcription	Stomach Smooth Muscle	stomach
49	chr18:43763600-43765400	Enhancers	Primary B cells from peripheral blood	blood
50	chr18:43763600-43770600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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