Variant report

Variant	rs59429424
Chromosome Location	chr18:43831492-43831493
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:43752714..43757131-chr18:43829030..43833510,5	MCF-7	breast:
2	chr18:43829216..43831646-chr18:43834393..43837026,3	K562	blood:

Variant related genes	Relation type
ENSG00000152242	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs56023140	1.00[EUR][1000 genomes]
rs56656421	1.00[AFR][1000 genomes]
rs59752873	1.00[EUR][1000 genomes]
rs59898569	0.81[AFR][1000 genomes]
rs60384600	1.00[EUR][1000 genomes]
rs7239202	0.81[AFR][1000 genomes]
rs73425152	0.81[AFR][1000 genomes]
rs73425154	0.81[AFR][1000 genomes]
rs73425190	1.00[AFR][1000 genomes]
rs73427114	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73427133	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73956216	1.00[EUR][1000 genomes]
rs73956217	1.00[EUR][1000 genomes]
rs73956219	1.00[EUR][1000 genomes]
rs73956264	1.00[EUR][1000 genomes]
rs73956269	1.00[EUR][1000 genomes]
rs73956270	1.00[EUR][1000 genomes]
rs73956272	1.00[EUR][1000 genomes]
rs73956273	1.00[EUR][1000 genomes]
rs73956280	1.00[EUR][1000 genomes]
rs73956281	1.00[EUR][1000 genomes]
rs73956284	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064031	chr18:43782309-43878806	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43797000-43833400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr18:43798800-43833800	Weak transcription	HepG2	liver
3	chr18:43799000-43834000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr18:43810200-43832400	Weak transcription	Aorta	Aorta
5	chr18:43820600-43833400	Weak transcription	Ovary	ovary
6	chr18:43825400-43844200	Weak transcription	Fetal Brain Female	brain
7	chr18:43825800-43834000	Weak transcription	Liver	Liver
8	chr18:43826200-43840000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr18:43826600-43847000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr18:43826800-43843600	Weak transcription	Brain Germinal Matrix	brain
11	chr18:43828200-43839600	Weak transcription	Right Atrium	heart
12	chr18:43828400-43839600	Weak transcription	Fetal Stomach	stomach
13	chr18:43828600-43832600	Enhancers	Placenta	Placenta
14	chr18:43829200-43840400	Weak transcription	K562	blood
15	chr18:43829200-43842800	Weak transcription	Fetal Muscle Leg	muscle
16	chr18:43829400-43832400	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr18:43830000-43837600	Weak transcription	Left Ventricle	heart
18	chr18:43830000-43839400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr18:43830000-43854200	Weak transcription	Esophagus	oesophagus
20	chr18:43830400-43839600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr18:43830400-43842800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr18:43830600-43833400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr18:43830600-43833600	Weak transcription	Stomach Smooth Muscle	stomach
24	chr18:43830600-43847400	Weak transcription	Pancreas	Pancrea
25	chr18:43830800-43832600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr18:43830800-43839800	Weak transcription	Fetal Heart	heart
27	chr18:43830800-43842600	Weak transcription	Gastric	stomach
28	chr18:43831000-43831600	Enhancers	Primary B cells from cord blood	blood
29	chr18:43831000-43831600	Enhancers	Primary T helper naive cells from peripheral blood	blood
30	chr18:43831000-43831600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr18:43831000-43831600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
32	chr18:43831000-43831600	Enhancers	Rectal Mucosa Donor 29	rectum
33	chr18:43831000-43831600	Strong transcription	Hela-S3	cervix
34	chr18:43831000-43831800	Enhancers	Primary T helper cells fromperipheralblood	blood
35	chr18:43831000-43832000	Enhancers	Primary B cells from peripheral blood	blood
36	chr18:43831000-43832600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr18:43831000-43832600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr18:43831000-43832800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr18:43831000-43832800	Weak transcription	Fetal Thymus	thymus
40	chr18:43831000-43832800	Weak transcription	NH-A	brain
41	chr18:43831000-43832800	Weak transcription	NHDF-Ad	bronchial
42	chr18:43831000-43832800	Weak transcription	Osteobl	bone
43	chr18:43831000-43833000	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr18:43831000-43833000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr18:43831000-43833000	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr18:43831000-43833400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr18:43831000-43833600	Enhancers	Primary neutrophils fromperipheralblood	blood
48	chr18:43831000-43833800	Weak transcription	Fetal Lung	lung
49	chr18:43831000-43834000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr18:43831000-43834000	Weak transcription	Brain Anterior Caudate	brain

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