Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:40684303..40686724-chr20:40689436..40690968,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10211843	0.87[ASN][1000 genomes]
rs11906902	0.87[ASN][1000 genomes]
rs11906984	0.87[ASN][1000 genomes]
rs2223913	0.86[ASN][1000 genomes]
rs35745973	0.87[ASN][1000 genomes]
rs4378862	0.80[ASN][1000 genomes]
rs6016666	0.86[ASN][1000 genomes]
rs6016673	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6029936	0.82[ASN][1000 genomes]
rs6093559	0.86[ASN][1000 genomes]
rs6093560	0.85[ASN][1000 genomes]
rs6102637	0.86[ASN][1000 genomes]
rs6102638	0.86[ASN][1000 genomes]
rs6102640	0.87[ASN][1000 genomes]
rs6102646	0.86[ASN][1000 genomes]
rs6102671	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6513759	0.86[CHB][hapmap];0.83[CHD][hapmap];1.00[TSI][hapmap];0.86[ASN][1000 genomes]
rs6513762	0.88[ASN][1000 genomes]
rs6513763	0.88[ASN][1000 genomes]
rs7264677	1.00[CHB][hapmap]
rs7266640	0.87[ASN][1000 genomes]
rs73269469	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8118890	0.86[ASN][1000 genomes]
rs8123660	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3381	chr20:39925326-40765696	Genic enhancers Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv532516	chr20:40451059-41097155	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:40690200-40692400	Enhancers	Fetal Brain Male	brain
2	chr20:40690400-40691600	Enhancers	Fetal Stomach	stomach

Quick Search: