Variant report
| Variant | rs11906902 |
|---|---|
| Chromosome Location | chr20:40659577-40659578 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10211843 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11906984 | 1.00[ASN][1000 genomes] |
| rs2223913 | 0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs35745973 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6016666 | 1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6016673 | 0.82[ASN][1000 genomes] |
| rs6029936 | 1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6029950 | 0.87[ASN][1000 genomes] |
| rs6029966 | 0.90[TSI][hapmap] |
| rs6093559 | 0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6093560 | 0.97[ASN][1000 genomes] |
| rs6102637 | 0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6102638 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6102640 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6102646 | 0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6102671 | 0.86[CHB][hapmap] |
| rs6513759 | 0.86[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap];0.99[ASN][1000 genomes] |
| rs6513762 | 0.96[ASN][1000 genomes] |
| rs6513763 | 0.96[ASN][1000 genomes] |
| rs7264677 | 0.85[CHB][hapmap] |
| rs7266640 | 1.00[ASN][1000 genomes] |
| rs73269469 | 0.82[ASN][1000 genomes] |
| rs8118890 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs8123660 | 0.96[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv3381 | chr20:39925326-40765696 | Genic enhancers Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 34 gene(s) | inside rSNPs | diseases |
| 2 | esv2751913 | chr20:40422982-41269321 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
| 3 | nsv532516 | chr20:40451059-41097155 | Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 4 | nsv912873 | chr20:40601021-40675704 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:40658600-40665800 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
