Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:40656350..40657204-chr20:40669571..40670470,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10211843	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11906902	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11906984	0.99[ASN][1000 genomes]
rs2223913	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35745973	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6016673	0.81[ASN][1000 genomes]
rs6029936	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6029950	0.86[ASN][1000 genomes]
rs6093559	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6093560	0.99[ASN][1000 genomes]
rs6102637	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6102638	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6102640	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6102646	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6513759	1.00[ASN][1000 genomes]
rs6513762	0.97[ASN][1000 genomes]
rs6513763	0.97[ASN][1000 genomes]
rs7266640	0.99[ASN][1000 genomes]
rs73269469	0.81[ASN][1000 genomes]
rs8118890	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8123660	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3381	chr20:39925326-40765696	Genic enhancers Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv532516	chr20:40451059-41097155	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv912873	chr20:40601021-40675704	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:40656800-40658000	Enhancers	Pancreatic Islets	Pancreatic Islet

Quick Search: