Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:40682886..40684431-chr20:40686804..40689582,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10211843	0.96[ASN][1000 genomes]
rs11906902	0.96[ASN][1000 genomes]
rs11906984	0.96[ASN][1000 genomes]
rs2223913	0.97[ASN][1000 genomes]
rs35745973	0.96[ASN][1000 genomes]
rs6016666	0.97[ASN][1000 genomes]
rs6016673	0.84[ASN][1000 genomes]
rs6029936	0.93[ASN][1000 genomes]
rs6029950	0.88[ASN][1000 genomes]
rs6093559	0.97[ASN][1000 genomes]
rs6093560	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6102637	0.97[ASN][1000 genomes]
rs6102638	0.97[ASN][1000 genomes]
rs6102640	0.96[ASN][1000 genomes]
rs6102646	0.97[ASN][1000 genomes]
rs6102671	0.93[CHB][hapmap]
rs6513759	0.93[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.97[ASN][1000 genomes]
rs6513762	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7264677	0.93[CHB][hapmap]
rs7266640	0.96[ASN][1000 genomes]
rs73269469	0.84[ASN][1000 genomes]
rs8118890	0.97[ASN][1000 genomes]
rs8123660	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3381	chr20:39925326-40765696	Genic enhancers Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv532516	chr20:40451059-41097155	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:40688000-40690400	Weak transcription	Fetal Stomach	stomach

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