Variant report
| Variant | rs8123660 |
|---|---|
| Chromosome Location | chr20:40687604-40687605 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr20:40682886..40684431-chr20:40686804..40689582,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10211843 | 0.96[ASN][1000 genomes] |
| rs11906902 | 0.96[ASN][1000 genomes] |
| rs11906984 | 0.83[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2223913 | 0.97[ASN][1000 genomes] |
| rs35745973 | 0.96[ASN][1000 genomes] |
| rs6016666 | 0.97[ASN][1000 genomes] |
| rs6016673 | 0.84[ASN][1000 genomes] |
| rs6029936 | 0.93[ASN][1000 genomes] |
| rs6029950 | 0.88[ASN][1000 genomes] |
| rs6093559 | 0.97[ASN][1000 genomes] |
| rs6093560 | 0.96[ASN][1000 genomes] |
| rs6102637 | 0.97[ASN][1000 genomes] |
| rs6102638 | 0.97[ASN][1000 genomes] |
| rs6102640 | 0.96[ASN][1000 genomes] |
| rs6102646 | 0.97[ASN][1000 genomes] |
| rs6513759 | 0.97[ASN][1000 genomes] |
| rs6513762 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6513763 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7266640 | 0.83[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs73269469 | 0.84[ASN][1000 genomes] |
| rs8118890 | 0.97[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv3381 | chr20:39925326-40765696 | Genic enhancers Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 34 gene(s) | inside rSNPs | diseases |
| 2 | esv2751913 | chr20:40422982-41269321 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
| 3 | nsv532516 | chr20:40451059-41097155 | Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:40687600-40688000 | Enhancers | Fetal Stomach | stomach |
