Variant report

Variant	rs35745973
Chromosome Location	chr20:40660996-40660997
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10211843	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11906902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11906984	0.97[ASN][1000 genomes]
rs2223912	0.88[EUR][1000 genomes]
rs2223913	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3084007	0.88[EUR][1000 genomes]
rs41278136	0.82[EUR][1000 genomes]
rs41278142	0.82[EUR][1000 genomes]
rs58841508	0.82[EUR][1000 genomes]
rs6016666	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6016670	0.88[EUR][1000 genomes]
rs6016673	0.82[ASN][1000 genomes]
rs6016681	0.82[EUR][1000 genomes]
rs6016682	0.82[EUR][1000 genomes]
rs6029936	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6029950	0.87[ASN][1000 genomes]
rs6029966	0.82[EUR][1000 genomes]
rs6093559	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6093560	0.97[ASN][1000 genomes]
rs6102637	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6102638	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6102640	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6102641	0.86[EUR][1000 genomes]
rs6102646	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6513759	0.99[ASN][1000 genomes]
rs6513762	0.96[ASN][1000 genomes]
rs6513763	0.96[ASN][1000 genomes]
rs6513765	0.82[EUR][1000 genomes]
rs7266640	0.97[ASN][1000 genomes]
rs73113854	0.80[EUR][1000 genomes]
rs73113856	0.80[EUR][1000 genomes]
rs73113859	0.80[EUR][1000 genomes]
rs73113864	0.80[EUR][1000 genomes]
rs73113865	0.80[EUR][1000 genomes]
rs73113870	0.86[EUR][1000 genomes]
rs73113872	0.84[EUR][1000 genomes]
rs73115457	0.88[EUR][1000 genomes]
rs73115458	0.88[EUR][1000 genomes]
rs73115478	0.88[EUR][1000 genomes]
rs73115479	0.88[EUR][1000 genomes]
rs73115480	0.88[EUR][1000 genomes]
rs73117860	0.84[EUR][1000 genomes]
rs73117872	0.88[EUR][1000 genomes]
rs73117886	0.84[EUR][1000 genomes]
rs73119803	0.82[EUR][1000 genomes]
rs73119807	0.82[EUR][1000 genomes]
rs73119815	0.82[EUR][1000 genomes]
rs73119820	0.82[EUR][1000 genomes]
rs73119823	0.82[EUR][1000 genomes]
rs73119847	0.82[EUR][1000 genomes]
rs73119850	0.82[EUR][1000 genomes]
rs73122781	0.84[EUR][1000 genomes]
rs73129112	0.82[EUR][1000 genomes]
rs73129138	0.82[EUR][1000 genomes]
rs73129147	0.82[EUR][1000 genomes]
rs73129161	0.82[EUR][1000 genomes]
rs73129169	0.82[EUR][1000 genomes]
rs73129170	0.82[EUR][1000 genomes]
rs73129176	0.82[EUR][1000 genomes]
rs73129180	0.82[EUR][1000 genomes]
rs73129186	0.82[EUR][1000 genomes]
rs73269469	0.82[ASN][1000 genomes]
rs8118890	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8123660	0.96[ASN][1000 genomes]
rs8124637	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3381	chr20:39925326-40765696	Genic enhancers Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv532516	chr20:40451059-41097155	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv912873	chr20:40601021-40675704	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:40658600-40665800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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